Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 0.0e+00 1352.4 765 100.0
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 2.9e-260 902.1 649 82.9
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 8.1e-255 884.0 646 77.4
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.8e-214 750.0 648 72.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 8.8e-209 731.1 649 70.9
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.1e-208 730.7 649 66.9
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.8e-207 726.1 709 65.3
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 2.4e-206 723.0 647 69.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 3.1e-206 722.6 683 66.5
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 3.6e-202 709.1 648 68.4
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 8.0e-202 708.0 663 67.4
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.8e-183 646.4 626 66.0
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 9.9e-136 488.4 652 52.6
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 2.9e-135 486.9 655 49.8
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 4.6e-133 479.6 650 47.2
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 2.3e-132 477.2 672 51.2
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 9.6e-131 471.9 663 46.2
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.3e-130 471.5 659 47.8
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.1e-130 470.7 680 49.3
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 4.8e-130 469.5 671 46.1
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 4.5e-128 463.0 647 47.0
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.9e-127 460.3 649 48.1
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.4e-126 458.0 650 45.7
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 6.7e-124 449.1 671 46.9
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 7.4e-123 445.7 647 45.0
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.6e-122 444.5 647 45.4
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.6e-122 444.5 647 44.8
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 2.4e-121 440.7 696 46.8
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.9e-121 439.1 655 44.0
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.2e-120 438.3 653 46.7
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.7e-119 434.5 649 46.4
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.2e-119 434.1 685 42.8
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.1e-118 431.8 486 53.5
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 2.5e-118 430.6 681 44.1
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 3.2e-118 430.3 657 46.7
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 5.5e-118 429.5 676 47.3
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 7.1e-118 429.1 685 42.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 1.6e-117 427.9 645 47.3
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 3.5e-117 426.8 653 45.0
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 5.1e-116 422.9 665 43.6
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 6.7e-116 422.5 670 43.6
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 8.7e-116 422.2 688 42.0
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.5e-115 421.4 665 45.1
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.5e-115 420.6 653 42.4
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.6e-114 417.9 669 43.9
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.8e-113 414.5 690 43.3
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 3.1e-113 413.7 668 43.6
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 5.3e-113 412.9 657 44.0
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 5.3e-113 412.9 649 43.9
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 7.6e-112 409.1 671 42.3
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 7.6e-112 409.1 663 46.8
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.0e-111 408.7 674 41.8
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 2.9e-111 407.1 666 42.9
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 5.0e-111 406.4 646 43.7
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 1.4e-110 404.8 645 43.3
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 5.5e-110 402.9 667 46.6
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 9.3e-110 402.1 663 41.3
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.7e-109 400.6 634 44.5
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 7.9e-109 399.1 672 41.2
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 1.0e-108 398.7 713 41.1
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 3.0e-108 397.1 664 42.6
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 6.7e-108 396.0 610 43.4
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 1.1e-107 395.2 672 46.4
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.6e-106 391.3 338 65.7
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 3.7e-106 390.2 655 44.9
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 8.2e-106 389.0 669 41.7
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 8.2e-106 389.0 663 45.7
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 8.2e-106 389.0 341 68.0
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.5e-104 384.8 668 41.0
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 3.4e-104 383.6 667 41.2
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 3.4e-104 383.6 654 45.4
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 1.3e-103 381.7 642 41.4
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 8.5e-103 379.0 642 42.2
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.1e-101 374.4 603 46.1
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 3.6e-101 373.6 403 51.9
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.6e-101 373.2 588 47.1
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.6e-101 373.2 588 47.1
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-100 371.7 676 40.5
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.2e-98 364.4 658 43.3
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 2.2e-98 364.4 643 40.7
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 6.3e-98 362.8 652 40.0
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 8.2e-98 362.5 618 42.6
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.4e-97 361.7 638 40.8
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 2.4e-97 360.9 649 40.8
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 6.9e-97 359.4 669 41.1
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.5e-96 358.2 649 45.6
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.5e-96 358.2 661 41.0
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 2.6e-96 357.5 662 40.2
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 7.7e-96 355.9 622 42.3
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 6.5e-95 352.8 736 35.9
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.2e-93 348.6 616 44.3
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 4.7e-93 346.7 500 45.4
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.4e-92 345.1 626 40.4
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 4.4e-91 340.1 618 39.0
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 9.7e-91 339.0 492 49.6
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 9.7e-91 339.0 383 52.5
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 5.5e-78 296.6 622 41.6
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 3.6e-77 293.9 537 39.1
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 8.0e-77 292.7 634 35.2
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.0e-76 292.4 347 48.7
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 9.8e-75 285.8 408 43.6
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 5.2e-68 263.5 386 42.5
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 8.3e-58 229.6 660 32.4
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.9e-49 201.8 216 54.2
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 3.4e-43 181.0 545 30.3
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 4.4e-43 180.6 488 30.9
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 5.4e-41 173.7 125 69.6
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.7e-40 171.4 443 33.2
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 4.6e-40 170.6 580 33.6
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.3e-39 169.1 284 41.5
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 3.6e-37 161.0 216 48.6
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 9.9e-35 152.9 434 35.9
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.7e-34 152.1 287 38.7
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.2e-34 151.8 112 67.0
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 3.8e-34 151.0 118 63.6
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 8.4e-34 149.8 118 61.9
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 4.1e-33 147.5 514 26.7
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 1.6e-32 145.6 193 47.2
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.0e-31 141.4 111 67.6
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 7.3e-30 136.7 112 67.0
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.1e-28 132.9 581 25.1
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 1.8e-28 132.1 331 32.3
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.8e-28 132.1 584 26.2
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 1.2e-27 129.4 113 60.2
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 1.7e-26 125.6 89 73.0
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 4.9e-26 124.0 93 71.0
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 6.6e-23 113.6 89 66.3
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 3.3e-22 111.3 214 34.6
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 3.4e-19 101.3 110 43.6
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 4.5e-19 100.9 432 28.7
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 5.4e-17 94.0 86 54.7
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 8.1e-13 80.1 356 23.9
Medtr2g093640 Medicago truncatula HOM05D000012 ORTHO05D001652 2.4e-12 78.6 57 66.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.7e-10 72.4 141 34.0
Medtr2g093160 Medicago truncatula HOM05D000012 ORTHO05D001652 3.8e-10 71.2 56 62.5
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 8.4e-10 70.1 396 25.5
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.4e-09 69.3 140 34.3
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 2.4e-09 68.6 141 33.3
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 4.2e-09 67.8 66 59.1
TPR.G11571 Trifolium pratense HOM05D000012 ORTHO05D001652 4.2e-09 67.8 52 61.5
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.6e-08 65.9 84 42.9
Medtr8g091275 Medicago truncatula HOM05D000012 ORTHO05D048816 2.1e-08 65.5 51 62.7
TPR.G12792 Trifolium pratense HOM05D000012 ORTHO05D001652 2.1e-08 65.5 55 60.0
Medtr2g093180 Medicago truncatula HOM05D000012 ORTHO05D001652 2.7e-08 65.1 58 55.2
Ca_01444_v3 Cicer arietinum L. HOM05D000012 ORTHO05D001652 1.0e-07 63.2 46 60.9
TPR.G7349 Trifolium pratense HOM05D000012 ORTHO05D048816 8.7e-07 60.1 55 56.4
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 7.4e-06 57.0 140 35.0


User provided reference genes

Program Settings