Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.7e-260 902.1 455 100.0
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 4.7e-234 814.3 456 90.1
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.2e-231 805.4 455 88.4
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 7.0e-222 773.9 455 85.1
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.8e-217 759.2 455 84.4
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.2e-216 756.5 434 89.2
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 3.7e-215 751.5 457 83.8
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 6.4e-215 750.7 457 83.6
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.7e-213 745.3 457 83.2
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 2.3e-212 742.3 456 81.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 2.2e-199 699.1 453 79.2
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.3e-188 662.5 458 74.0
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.5e-187 659.1 486 71.2
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 4.3e-187 658.3 459 72.8
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.3e-186 656.8 459 75.4
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.1e-185 653.7 452 75.0
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.2e-184 650.2 464 71.3
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 2.0e-184 649.4 464 72.0
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.7e-183 646.4 457 74.4
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.4e-182 643.3 457 73.7
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.2e-182 641.7 457 73.5
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.1e-182 641.0 457 73.7
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.7e-181 639.0 456 71.1
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.0e-180 637.1 456 71.7
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.5e-179 633.3 458 71.4
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 3.3e-179 632.1 456 71.1
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 7.4e-179 630.9 458 70.7
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.3e-178 630.2 459 71.5
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.8e-178 629.0 457 71.1
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 8.1e-178 627.5 459 71.5
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 8.1e-178 627.5 451 71.6
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.1e-177 627.1 459 71.2
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.4e-177 626.7 451 72.1
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.4e-177 626.7 459 71.2
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 2.4e-177 625.9 457 71.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.0e-177 625.2 459 71.2
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.0e-177 625.2 457 70.0
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 7.6e-176 620.9 456 70.8
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 9.9e-176 620.5 478 68.4
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 9.9e-176 620.5 462 71.0
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.9e-174 616.3 456 69.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.9e-174 616.3 456 69.3
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 2.4e-174 615.9 466 69.1
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.2e-173 613.6 450 71.1
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.2e-173 613.6 438 73.3
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 2.1e-173 612.8 452 69.5
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.5e-173 612.1 456 68.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.3e-172 610.1 492 66.5
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.8e-172 609.8 447 70.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 8.7e-172 607.4 457 68.9
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.3e-170 603.6 457 69.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.7e-170 602.1 450 68.9
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 6.2e-170 601.3 456 68.9
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 8.2e-170 600.9 478 68.2
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 5.3e-169 598.2 453 69.1
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.7e-167 593.2 453 67.5
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 3.8e-167 592.0 479 66.8
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 4.9e-167 591.7 458 67.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 6.5e-167 591.3 458 67.5
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.1e-166 590.5 475 66.9
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.1e-166 590.5 456 66.9
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.4e-166 590.1 447 68.9
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.5e-166 589.3 454 67.2
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 4.2e-166 588.6 457 68.9
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 4.2e-166 588.6 451 66.7
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.2e-165 587.0 457 67.0
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 4.6e-165 585.1 457 66.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 4.6e-165 585.1 457 66.7
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 7.9e-165 584.3 536 59.5
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.0e-164 583.9 451 67.4
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.0e-164 583.9 460 67.2
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-164 583.2 451 68.3
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.5e-163 579.3 452 66.6
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.3e-163 578.6 458 66.4
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 9.7e-163 577.4 455 66.2
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.6e-162 576.6 428 70.1
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.6e-162 576.6 452 68.1
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.2e-162 576.2 460 66.5
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.2e-162 576.2 458 66.4
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 2.2e-162 576.2 458 65.7
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 4.8e-162 575.1 473 66.0
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 5.3e-161 571.6 428 70.1
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 2.0e-160 569.7 450 66.7
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.0e-160 569.7 455 65.7
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.0e-160 569.7 451 66.7
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.4e-160 568.9 455 65.9
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 7.6e-160 567.8 454 66.7
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 7.6e-160 567.8 454 66.7
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 7.6e-160 567.8 455 65.5
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.0e-159 567.4 454 66.5
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.0e-159 567.4 449 67.5
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.0e-159 567.4 455 65.7
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.3e-159 567.0 447 67.6
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.5e-158 562.8 453 66.0
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 5.5e-158 561.6 451 65.4
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.6e-157 560.1 453 66.4
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 2.1e-157 559.7 456 66.0
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.6e-157 558.9 455 65.5
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 4.6e-157 558.5 453 66.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 6.1e-157 558.1 441 67.1
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 7.9e-157 557.8 451 67.2
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.9e-156 555.4 454 65.4
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 5.1e-156 555.1 448 65.0
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.2e-154 549.7 443 65.0
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.8e-154 549.3 453 65.8
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.8e-154 549.3 450 64.9
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 3.7e-154 548.9 443 65.0
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.4e-153 547.0 460 64.3
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.7e-151 540.0 449 66.6
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.8e-151 538.9 429 65.7
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.8e-151 538.9 449 66.4
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.5e-150 536.2 452 64.4
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 5.5e-150 535.0 458 61.4
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 9.4e-150 534.3 517 56.5
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.6e-149 533.5 451 64.5
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 6.7e-148 528.1 450 64.2
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.6e-144 516.2 439 64.5
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 4.5e-144 515.4 424 64.6
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.5e-143 511.5 450 60.2
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.1e-141 506.5 432 64.1
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 3.1e-137 492.7 467 59.3
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.6e-136 489.6 420 63.3
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.5e-136 489.2 448 59.4
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.0e-135 487.6 428 59.6
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 6.1e-133 478.4 515 54.4
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.5e-131 473.8 455 57.4
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 2.7e-128 463.0 289 81.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 7.7e-128 461.5 415 61.4
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.1e-125 451.8 389 62.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 5.2e-124 448.7 459 57.1
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.5e-118 430.6 431 53.8
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 4.9e-114 415.6 323 68.1
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 4.9e-114 415.6 473 51.4
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 7.3e-110 401.7 455 51.2
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 3.6e-109 399.4 341 61.6
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 2.9e-106 389.8 451 50.3
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.4e-97 360.1 463 47.9
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.5e-94 350.1 278 65.8
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-91 341.3 318 59.7
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.3e-86 323.2 316 58.2
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 6.6e-79 298.9 479 40.7
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.6e-77 294.3 290 57.6
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 7.6e-75 285.4 195 72.8
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.1e-71 272.7 194 71.1
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 8.7e-71 271.9 298 51.7
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.8e-68 264.2 262 56.1
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.6e-67 260.4 193 66.8
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.9e-65 254.2 217 62.7
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.7e-64 250.4 190 69.5
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.4e-60 237.3 237 58.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.9e-57 227.6 449 37.9
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 9.3e-57 225.3 152 76.3
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.3e-53 214.9 186 63.4
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.0e-51 207.6 222 53.2
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.5e-48 196.8 171 57.9
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.0e-47 195.3 129 75.2
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 6.3e-45 186.0 118 74.6
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.1e-44 185.3 356 36.0
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.4e-44 184.9 137 66.4
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.0e-43 181.0 298 41.3
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 5.0e-42 176.4 482 31.1
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 4.8e-37 159.8 293 36.5
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.4e-35 153.7 170 49.4
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.2e-33 146.7 156 53.8
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 9.4e-33 145.6 155 56.8
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.0e-31 142.1 129 65.1
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.8e-28 131.3 126 59.5
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.6e-27 127.5 102 61.8
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.8e-26 123.6 75 78.7
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 9.4e-25 119.0 112 65.2
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.8e-23 114.8 79 78.5
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 4.5e-19 100.1 73 72.6
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 1.7e-13 81.6 122 45.1
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 3.7e-13 80.5 51 76.5
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 1.0e-10 72.4 61 59.0
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.3e-10 72.0 46 73.9
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.9e-10 70.9 52 75.0
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.1e-09 68.9 50 70.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 4.2e-09 67.0 118 38.1
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 8.8e-07 59.3 76 47.4
Lsat_1_v5_gn_5_45480 Lactuca sativa HOM05D002054 ORTHO05D004936 1.5e-06 58.5 169 28.4
arahy.Tifrunner.gnm1.ann1.6Q3TNQ Arachis hypogaea HOM05D000799 ORTHO05D000629 9.8e-06 55.8 63 44.4


User provided reference genes

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