Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 8.0e-89 332.0 314 100.0
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 2.6e-55 220.7 122 89.3
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 3.8e-54 216.9 121 86.8
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 8.4e-54 215.7 137 74.5
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 4.2e-53 213.4 137 75.2
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 2.1e-52 211.1 122 85.2
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 1.2e-47 195.3 137 70.8
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 2.9e-46 190.7 141 68.8
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 8.4e-46 189.1 135 71.1
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.2e-44 185.3 137 65.7
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 2.1e-41 174.5 135 63.7
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 1.8e-40 171.4 137 61.3
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 9.0e-40 169.1 116 71.6
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 9.0e-40 169.1 137 59.9
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 9.9e-39 165.6 128 63.3
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 4.3e-34 150.2 137 54.7
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.3e-30 138.7 103 65.0
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 2.5e-29 134.4 109 63.3
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 1.1e-26 125.6 107 56.1
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 1.3e-25 122.1 119 50.4
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 5.8e-23 113.2 80 68.8
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 2.2e-22 111.3 81 64.2
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 2.9e-22 110.9 82 67.1
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 1.9e-21 108.2 82 63.4
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 1.2e-20 105.5 78 64.1
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 4.6e-20 103.6 83 63.9
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.0e-19 102.4 84 63.1
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 1.0e-19 102.4 82 61.0
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 1.3e-19 102.1 109 51.4
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 3.9e-19 100.5 81 60.5
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 5.1e-19 100.1 79 62.0
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 6.7e-19 99.8 79 63.3
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 1.1e-18 99.0 82 56.1
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 1.9e-18 98.2 68 64.7
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 1.3e-17 95.5 81 56.8
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 3.7e-17 94.0 66 65.2
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 8.2e-17 92.8 80 58.8
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.4e-16 92.0 74 62.2
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.4e-16 92.0 68 61.8
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.4e-16 92.0 68 61.8
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.8e-16 91.7 67 62.7
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 3.1e-16 90.9 73 63.0
Oeu056704.1 Olea europaea HOM05D007686 ORTHO05D009709 3.1e-16 90.9 67 62.7
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 6.9e-16 89.7 66 60.6
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 6.9e-16 89.7 73 63.0
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 1.2e-15 89.0 58 67.2
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.5e-15 88.6 62 67.7
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 5.9e-15 86.7 76 56.6
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 1.0e-14 85.9 66 63.6
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.3e-14 85.5 63 65.1
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 2.9e-14 84.3 58 69.0
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 3.8e-14 84.0 78 56.4
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 5.0e-14 83.6 72 58.3
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 8.5e-14 82.8 54 70.4
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 8.5e-14 82.8 54 70.4
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 1.1e-13 82.4 58 67.2
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.4e-13 82.0 63 63.5
Ah.10g031010 Amaranthus hybridus HOM05D007686 ORTHO05D009709 3.2e-13 80.9 54 70.4
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 3.2e-13 80.9 66 60.6
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 3.2e-13 80.9 54 68.5
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 7.2e-13 79.7 77 51.9
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 3.6e-12 77.4 53 69.8
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 4.6e-12 77.0 54 66.7
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 6.1e-12 76.6 103 40.8
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 7.9e-12 76.3 74 56.8
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 5.1e-11 73.6 78 50.0
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 8.8e-11 72.8 47 66.0
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 3.3e-10 70.9 48 68.8
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 7.4e-10 69.7 47 68.1
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 7.4e-10 69.7 51 60.8
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 7.4e-10 69.7 51 60.8
Peaxi162Scf00207g01213 Petunia axillaris HOM05D007686 ORTHO05D009709 7.4e-10 69.7 49 63.3
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 7.4e-10 69.7 56 62.5
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 3.7e-09 67.4 53 60.4
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 3.7e-09 67.4 50 62.0
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 3.7e-09 67.4 45 71.1
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 6.3e-09 66.6 53 60.4
Carub.0002s0151 Capsella rubella HOM05D000162 ORTHO05D000090 6.3e-09 66.6 123 30.1
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 1.1e-08 65.9 53 60.4
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 1.1e-08 65.9 53 60.4
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 1.4e-08 65.5 51 58.8
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 1.8e-08 65.1 51 58.8
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 1.8e-08 65.1 51 58.8
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 1.8e-08 65.1 51 58.8
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 1.8e-08 65.1 51 58.8
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 4.1e-08 63.9 51 60.8
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 4.1e-08 63.9 51 60.8
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 4.1e-08 63.9 51 58.8
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 4.1e-08 63.9 51 58.8
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 6.9e-08 63.2 52 57.7
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 1.2e-07 62.4 51 60.8
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 1.2e-07 62.4 51 60.8
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 1.2e-07 62.4 112 28.6
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 5.9e-07 60.1 112 27.7
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 7.7e-07 59.7 48 62.5
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 1.0e-06 59.3 41 61.0


User provided reference genes

Program Settings