Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 6.4e-237 823.9 492 100.0
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 2.0e-174 616.3 421 89.8
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 2.3e-109 400.2 436 56.2
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 4.3e-100 369.4 538 48.5
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 4.0e-98 362.8 485 48.9
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 1.0e-96 358.2 534 47.2
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 2.3e-93 347.1 631 43.7
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 8.7e-93 345.1 434 49.8
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 2.2e-88 330.5 482 47.5
Medtr2g006000 Medicago truncatula HOM05D008992 ORTHO05D002272 1.0e-85 321.6 447 48.3
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 1.5e-81 307.8 512 43.0
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 1.4e-69 268.1 464 39.9
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 8.0e-62 242.3 229 54.1
Medtr4g417280 Medicago truncatula HOM05D000053 ORTHO05D002272 5.9e-57 226.1 406 44.3
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 8.8e-53 212.2 311 43.7
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 9.1e-50 202.2 228 50.9
Ca_16626_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 3.8e-48 196.8 358 41.3
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 8.3e-43 179.1 228 46.9
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 8.3e-43 179.1 214 46.7
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 7.0e-42 176.0 257 44.4
Medtr4g417290 Medicago truncatula HOM05D008992 ORTHO05D002272 5.9e-41 172.9 233 50.6
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 1.1e-39 168.7 221 43.0
Medtr2g022010 Medicago truncatula HOM05D008992 ORTHO05D002272 7.2e-39 166.0 283 41.7
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 2.1e-38 164.5 427 33.3
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 3.5e-33 147.1 184 44.6
Lj4g0011648 Lotus japonicus HOM05D008992 ORTHO05D002272 2.9e-32 144.1 202 44.1
Medtr8g089435 Medicago truncatula HOM05D008992 ORTHO05D002272 3.9e-32 143.7 203 48.8
Lalb_Chr12g0204211 Lupinus albus HOM05D008992 ORTHO05D002272 1.0e-29 135.6 205 37.6
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 3.7e-27 127.1 186 40.9
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 1.1e-26 125.6 186 39.8
Medtr8g089540 Medicago truncatula HOM05D008992 ORTHO05D002272 1.4e-26 125.2 176 46.0
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 1.9e-26 124.8 216 38.4
COL.COLO4_31049 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.2e-22 112.1 218 33.5
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 1.4e-21 108.6 227 33.9
Cpa.g.sc6.181 Carica papaya HOM05D002972 ORTHO05D002272 1.3e-19 102.1 217 31.3
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 3.7e-19 100.5 217 35.5
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 4.9e-19 100.1 219 30.1
Thecc.01G020000 Theobroma cacao HOM05D000126 ORTHO05D000085 1.6e-17 95.1 185 34.1
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 4.6e-17 93.6 185 34.1
Lj4A209T44 Lonicera japonica HOM05D002972 ORTHO05D002272 4.6e-17 93.6 156 36.5
Peaxi162Scf00015g00226 Petunia axillaris HOM05D002972 ORTHO05D002272 4.6e-17 93.6 241 31.1
Peaxi162Scf00126g10126 Petunia axillaris HOM05D002972 ORTHO05D002272 4.6e-17 93.6 219 32.4
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 6.0e-17 93.2 213 30.5
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 7.8e-17 92.8 186 31.2
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 1.3e-16 92.0 185 33.5
CAN.G438.50 Capsicum annuum HOM05D002972 ORTHO05D002272 2.3e-16 91.3 225 30.7
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 2.3e-16 91.3 187 30.5
Lj4A209T45 Lonicera japonica HOM05D002972 ORTHO05D002272 1.9e-15 88.2 157 34.4
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 2.5e-15 87.8 157 35.0
Peaxi162Scf00015g00238 Petunia axillaris HOM05D002972 ORTHO05D002272 2.5e-15 87.8 230 30.4
AUR62007622 Chenopodium quinoa HOM05D001706 ORTHO05D001789 3.3e-15 87.4 215 35.3
Nitab4.5_0003159g0070 Nicotiana tabacum HOM05D002972 ORTHO05D002272 7.3e-15 86.3 187 33.7
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 9.5e-15 85.9 159 34.6
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 9.5e-15 85.9 177 36.2
TWI09G0202 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 9.5e-15 85.9 210 28.1
Duzib264G0210 Durio zibethinus HOM05D000126 ORTHO05D000085 1.2e-14 85.5 185 31.4
CSS0006608 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 4.7e-14 83.6 197 32.5
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 4.7e-14 83.6 139 41.0
Dinv10222 Davidia involucrata HOM05D002972 ORTHO05D002272 1.1e-13 82.4 113 44.2
Dinv41127 Davidia involucrata HOM05D002972 ORTHO05D002272 1.8e-13 81.6 158 37.3
Solyc03g120360.1 Solanum lycopersicum HOM05D002972 ORTHO05D002272 1.8e-13 81.6 225 31.1
Glyma.08G129502 Glycine max HOM05D008992 ORTHO05D002272 3.1e-13 80.9 106 44.3
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 3.1e-13 80.9 147 32.7
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 5.2e-13 80.1 109 37.6
PGSC0003DMG400002637 Solanum tuberosum HOM05D002972 ORTHO05D002272 5.2e-13 80.1 216 30.6
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 6.8e-13 79.7 219 27.9
Sopen03g039260 Solanum pennellii HOM05D002972 ORTHO05D002272 6.8e-13 79.7 205 32.2
Dinv05661 Davidia involucrata HOM05D002972 ORTHO05D002272 1.5e-12 78.6 139 38.8
Cc07_g10090 Coffea canephora HOM05D002972 ORTHO05D002272 2.6e-12 77.8 222 29.7
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 5.8e-12 76.6 183 32.8
EL10As8g23886 Beta vulgaris HOM05D002972 ORTHO05D002272 2.2e-11 74.7 158 30.4
Hund14010 Selenicereus undatus HOM05D002972 ORTHO05D002272 3.7e-11 73.9 209 26.8
TWI18G1012 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 6.4e-11 73.2 148 29.7
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 1.4e-10 72.0 216 27.3
Migut.L00029 Erythranthe guttata HOM05D002972 ORTHO05D002272 2.4e-10 71.2 140 31.4
Hund14008 Selenicereus undatus HOM05D002972 ORTHO05D002272 3.2e-10 70.9 208 25.5
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 5.4e-10 70.1 191 25.7
CANSAT25G2833 Cannabis sativa HOM05D002972 ORTHO05D002272 7.1e-10 69.7 205 24.9
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 9.2e-10 69.3 201 25.4
CAN.G774.17 Capsicum annuum HOM05D012638 ORTHO05D002272 2.1e-09 68.2 135 39.3
ECA247G2469 Erigeron canadensis HOM05D000555 ORTHO05D000646 2.1e-09 68.2 134 32.8
TWI09G0157 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 2.1e-09 68.2 181 32.0
Aa31LG6G16600 Aethionema arabicum HOM05D002972 ORTHO05D002272 2.7e-09 67.8 178 28.7
Lalb_Chr12g0204191 Lupinus albus HOM05D008992 ORTHO05D002272 3.5e-09 67.4 95 38.9
Glyma.04G003100 Glycine max HOM05D002972 ORTHO05D002272 4.6e-09 67.0 209 23.9
Cpa.g.sc6.240 Carica papaya HOM05D000126 ORTHO05D002272 6.0e-09 66.6 92 39.1
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 6.0e-09 66.6 216 27.8
Lsat_1_v5_gn_1_32161 Lactuca sativa HOM05D000555 ORTHO05D000646 6.0e-09 66.6 115 38.3
VMungo0720G1914 Vigna mungo HOM05D002972 ORTHO05D002272 6.0e-09 66.6 141 27.7
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 7.8e-09 66.2 166 29.5
Nitab4.5_0000580g0290 Nicotiana tabacum HOM05D012638 ORTHO05D002272 1.0e-08 65.9 136 31.6
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.3e-08 65.5 117 30.8
Oeu028335.1 Olea europaea HOM05D000555 ORTHO05D002272 1.3e-08 65.5 148 29.7
unitig_0.g1105 Utricularia gibba HOM05D002972 ORTHO05D002272 1.3e-08 65.5 103 32.0
vmacro17724 Vaccinium macrocarpon HOM05D002972 ORTHO05D002272 1.3e-08 65.5 154 29.9
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 1.7e-08 65.1 203 28.6
SGA_v2.0_scaffold47G17652 Striga asiatica HOM05D002972 ORTHO05D002272 1.7e-08 65.1 217 25.8
ECA247G3063 Erigeron canadensis HOM05D000555 ORTHO05D000646 2.3e-08 64.7 159 30.8
SalBow1G2737 Salvia bowleyana HOM05D012638 ORTHO05D002272 2.3e-08 64.7 178 29.8
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 3.0e-08 64.3 125 28.0
Glyma.10G281600 Glycine max HOM05D002972 ORTHO05D002272 6.6e-08 63.2 141 27.0
Sp3g30180 Schrenkiella parvula HOM05D002972 ORTHO05D002272 6.6e-08 63.2 142 31.0
PGR142G3650 Punica granatum HOM05D002972 ORTHO05D002272 8.6e-08 62.8 121 30.6
SalBow6G4808 Salvia bowleyana HOM05D002972 ORTHO05D002272 8.6e-08 62.8 144 27.8
BcaC06g36191 Brassica carinata HOM05D002972 ORTHO05D002272 1.1e-07 62.4 141 29.1
C07p06710 Brassica napus HOM05D002972 ORTHO05D002272 1.1e-07 62.4 141 29.1
BolC7t41094H Brassica oleracea HOM05D002972 ORTHO05D002272 1.1e-07 62.4 141 29.1
BraA07t28213Z Brassica rapa HOM05D002972 ORTHO05D002272 1.1e-07 62.4 139 29.5
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 1.1e-07 62.4 125 32.0
HanXRQChr02g0033881 Helianthus annuus HOM05D002069 ORTHO05D002997 1.1e-07 62.4 113 31.0
Sp4g00150 Schrenkiella parvula HOM05D002972 ORTHO05D002272 1.1e-07 62.4 233 27.9
THA.LOC104824764 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 1.1e-07 62.4 199 23.6
Thhalv10022729m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 1.5e-07 62.0 113 33.6
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 1.9e-07 61.6 214 27.1
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.9e-07 61.6 125 24.0
A03p46120 Brassica napus HOM05D002972 ORTHO05D002272 2.5e-07 61.2 143 30.1
CAN.G774.15 Capsicum annuum HOM05D012638 ORTHO05D002272 2.5e-07 61.2 115 32.2
ECA247G2489 Erigeron canadensis HOM05D000555 ORTHO05D000646 2.5e-07 61.2 136 30.9
Glyma.20G107600 Glycine max HOM05D002972 ORTHO05D002272 2.5e-07 61.2 168 26.2
Oeu009176.1 Olea europaea HOM05D012638 ORTHO05D002272 2.5e-07 61.2 171 26.9
Aa31LG7G15670 Aethionema arabicum HOM05D002972 ORTHO05D002272 3.3e-07 60.8 211 23.2
CARHR243390 Cardamine hirsuta HOM05D002972 ORTHO05D002272 3.3e-07 60.8 114 33.3
ECA247G4030 Erigeron canadensis HOM05D009001 ORTHO05D011396 3.3e-07 60.8 126 29.4
Lalb_Chr06g0163671 Lupinus albus HOM05D002972 ORTHO05D002272 3.3e-07 60.8 106 31.1
TAR633G1264 Trochodendron aralioides HOM05D002972 ORTHO05D002272 3.3e-07 60.8 198 28.3
CARHR107190 Cardamine hirsuta HOM05D002972 ORTHO05D002272 4.3e-07 60.5 140 27.9
QL07p013083 Quercus lobata HOM05D030119 ORTHO05D002272 4.3e-07 60.5 100 35.0
TAR374G0968 Trochodendron aralioides HOM05D008992 ORTHO05D002272 4.3e-07 60.5 121 28.1
AT2G20960 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 5.6e-07 60.1 172 25.6
BcaC01g00847 Brassica carinata HOM05D002972 ORTHO05D002272 5.6e-07 60.1 114 33.3
C03p85160 Brassica napus HOM05D002972 ORTHO05D002272 5.6e-07 60.1 114 33.3
BolC3t20805H Brassica oleracea HOM05D002972 ORTHO05D002272 5.6e-07 60.1 114 33.3
Carub.0003s3071 Capsella rubella HOM05D002972 ORTHO05D002272 5.6e-07 60.1 135 28.9
Nitab4.5_0003441g0060 Nicotiana tabacum HOM05D012638 ORTHO05D002272 5.6e-07 60.1 157 29.3
QL07p013092 Quercus lobata HOM05D030119 ORTHO05D002272 5.6e-07 60.1 96 33.3
HanXRQChr02g0033861 Helianthus annuus HOM05D002972 ORTHO05D002272 7.3e-07 59.7 105 31.4
Lalb_Chr08g0246731 Lupinus albus HOM05D002972 ORTHO05D002272 7.3e-07 59.7 151 26.5
SGA_v2.0_scaffold47G17653 Striga asiatica HOM05D002972 ORTHO05D002272 7.3e-07 59.7 207 26.6
BraA08t33603Z Brassica rapa HOM05D002972 ORTHO05D002272 9.6e-07 59.3 114 33.3
CAN.G774.16 Capsicum annuum HOM05D012638 ORTHO05D002272 9.6e-07 59.3 115 31.3
ECA247G0643 Erigeron canadensis HOM05D002069 ORTHO05D002997 9.6e-07 59.3 147 25.9
A08p16350 Brassica napus HOM05D002972 ORTHO05D002272 1.2e-06 58.9 114 33.3
BraA03t13740Z Brassica rapa HOM05D002972 ORTHO05D002272 1.2e-06 58.9 142 29.6
COL.COLO4_17698 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.2e-06 58.9 101 33.7
HanXRQChr02g0043901 Helianthus annuus HOM05D000555 ORTHO05D000646 1.2e-06 58.9 89 34.8
BcaB08g34952 Brassica carinata HOM05D002972 ORTHO05D002272 1.6e-06 58.5 220 26.4
BraA08t34372Z Brassica rapa HOM05D002972 ORTHO05D002272 1.6e-06 58.5 215 25.1
Lsat_1_v5_gn_1_32181 Lactuca sativa HOM05D012877 ORTHO05D010592 1.6e-06 58.5 166 24.7
AL4G10090 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 2.1e-06 58.2 222 24.8
ECA236G0425 Erigeron canadensis HOM05D000555 ORTHO05D000646 2.1e-06 58.2 124 25.8
Solyc03g116930.3 Solanum lycopersicum HOM05D000555 ORTHO05D000646 2.1e-06 58.2 119 29.4
PGSC0003DMG400019830 Solanum tuberosum HOM05D015155 ORTHO05D002272 2.1e-06 58.2 105 32.4
TAR636G2942 Trochodendron aralioides HOM05D000112 ORTHO05D001918 2.1e-06 58.2 171 28.7
BolC3t15632H Brassica oleracea HOM05D002972 ORTHO05D002272 2.8e-06 57.8 205 25.4
ECA247G1300 Erigeron canadensis HOM05D010915 ORTHO05D002272 2.8e-06 57.8 105 30.5
Migut.I00843 Erythranthe guttata HOM05D002972 ORTHO05D002272 2.8e-06 57.8 138 30.4
Aa31LG2G15380 Aethionema arabicum HOM05D002972 ORTHO05D002272 4.7e-06 57.0 117 31.6
AL7G10450 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 4.7e-06 57.0 234 26.5
Dinv37647 Davidia involucrata HOM05D002972 ORTHO05D002272 4.7e-06 57.0 184 28.3
HanXRQChr04g0099571 Helianthus annuus HOM05D010915 ORTHO05D002272 4.7e-06 57.0 87 36.8
Carub.0007s0520 Capsella rubella HOM05D002972 ORTHO05D002272 6.2e-06 56.6 143 31.5
AT5G11140 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 8.1e-06 56.2 187 23.5
BcaB03g11788 Brassica carinata HOM05D002972 ORTHO05D002272 8.1e-06 56.2 132 31.8
HanXRQChr02g0033841 Helianthus annuus HOM05D000555 ORTHO05D000646 8.1e-06 56.2 102 31.4


User provided reference genes

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