Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g087850 Medicago truncatula HOM05D000445 ORTHO05D000314 2.3e-26 121.3 56 100.0
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 1.0e-13 79.3 50 74.0
Medtr0052s0190 Medicago truncatula HOM05D000445 ORTHO05D000314 1.3e-13 79.0 50 78.0
Medtr0055s0010 Medicago truncatula HOM05D000445 ORTHO05D000314 1.3e-13 79.0 50 78.0
arahy.Tifrunner.gnm1.ann1.5ZHC49 Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-13 78.2 50 74.0
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
arahy.Tifrunner.gnm1.ann1.9T9XDL Arachis hypogaea HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
arahy.Tifrunner.gnm1.ann1.SV0IPA Arachis hypogaea HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
Psat0s1661g0120 Pisum sativum HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
Psat0s2065g0040 Pisum sativum HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
Psat0s2261g0160 Pisum sativum HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
Psat0s680g0040 Pisum sativum HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
Psat5g167960 Pisum sativum HOM05D000445 ORTHO05D000314 3.0e-13 77.8 50 74.0
Ca_18862_v3 Cicer arietinum L. HOM05D000445 ORTHO05D000314 5.0e-13 77.0 50 74.0
Sed0006678 Sechium edule HOM05D000445 ORTHO05D000314 5.0e-13 77.0 50 74.0
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 6.6e-13 76.6 50 74.0
LjContig00318g0026726 Lotus japonicus HOM05D000445 ORTHO05D000314 6.6e-13 76.6 50 74.0
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 6.6e-13 76.6 50 74.0
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.1e-12 75.9 50 70.0
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 70.0
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 70.0
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 70.0
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 70.0
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 70.0
Ah.10g028580 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 70.0
Medtr3g035670 Medicago truncatula HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 76.0
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 1.5e-12 75.5 50 76.0
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 1.9e-12 75.1 50 72.0
Lalb_Chr12g0206621 Lupinus albus HOM05D000445 ORTHO05D000314 1.9e-12 75.1 50 72.0
Psat2g138200 Pisum sativum HOM05D000445 ORTHO05D000314 1.9e-12 75.1 50 72.0
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.5e-12 74.7 50 70.0
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.5e-12 74.7 50 70.0
Hma1.2p1_1244F.1_g270040 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.5e-12 74.7 50 70.0
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.5e-12 74.7 50 70.0
Lalb_Chr19g0124431 Lupinus albus HOM05D000445 ORTHO05D000314 2.5e-12 74.7 50 72.0
AUR62032991 Chenopodium quinoa HOM05D000445 ORTHO05D000314 3.3e-12 74.3 50 68.0
EL10As15g24112 Beta vulgaris HOM05D000445 ORTHO05D000314 4.3e-12 73.9 50 68.0
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 4.3e-12 73.9 50 68.0
CDE02G2037 Ceratophyllum demersum HOM05D000445 ORTHO05D000314 1.6e-11 72.0 57 64.9
SalBow1G2382 Salvia bowleyana HOM05D000445 ORTHO05D000314 2.1e-11 71.6 52 69.2
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 2.1e-11 71.6 52 69.2
DCAR_031660 Daucus carota HOM05D000445 ORTHO05D000314 2.8e-11 71.2 50 68.0
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 2.8e-11 71.2 50 68.0
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 2.8e-11 71.2 50 68.0
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.8e-11 71.2 49 69.4
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.8e-11 71.2 49 69.4
Cpa.g.sc3885.1 Carica papaya HOM05D000445 ORTHO05D000314 3.6e-11 70.9 52 69.2
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 3.6e-11 70.9 52 69.2
ClCG02G009750 Citrullus lanatus HOM05D000445 ORTHO05D000314 3.6e-11 70.9 52 71.2
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 3.6e-11 70.9 52 67.3
Potri.019G028400 Populus trichocarpa HOM05D000445 ORTHO05D000314 3.6e-11 70.9 52 67.3
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 3.6e-11 70.9 52 69.2
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 3.6e-11 70.9 52 69.2
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.7e-11 70.5 50 66.0
ATR0721G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 4.7e-11 70.5 59 64.4
Nn031s41601 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.7e-11 70.5 59 64.4
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.7e-11 70.5 59 64.4
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.7e-11 70.5 59 64.4
Nn301s46228 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.7e-11 70.5 59 64.4
Nn6g33132 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.7e-11 70.5 59 64.4
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 4.7e-11 70.5 52 67.3
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 4.7e-11 70.5 52 67.3
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 4.7e-11 70.5 59 64.4
EL10As26g24242 Beta vulgaris HOM05D000445 ORTHO05D000314 8.0e-11 69.7 50 64.0
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr00c0392g0574451 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr00c0533g0575541 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr00c0572g0575981 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr00c0634g0576591 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr04g0127421 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr13g0413621 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr13g0416591 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQChr17g0569651 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.3 50 66.0
AL1G51280 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
AL2G21800 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
AL2G21840 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
AL7G44060 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
AL9U12050 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
Eucgr.H01298 Eucalyptus grandis HOM05D000445 ORTHO05D000314 1.4e-10 68.9 51 68.6
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 1.4e-10 68.9 52 67.3
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 1.8e-10 68.6 54 64.8
Phvul.003G094800 Phaseolus vulgaris HOM05D000445 ORTHO05D000314 2.3e-10 68.2 49 67.3
BNapus_Darmor_BZH_scaffold_287p00320 Brassica napus HOM05D000445 ORTHO05D000314 3.1e-10 67.8 52 65.4
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 3.1e-10 67.8 52 65.4
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 3.1e-10 67.8 52 65.4
BraSC25t45894Z Brassica rapa HOM05D000445 ORTHO05D000314 3.1e-10 67.8 52 65.4
Gohir.A02G077401 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.0e-10 67.4 52 67.3
Gohir.D02G117422 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.0e-10 67.4 52 67.3
MELO3C027250.2 Cucumis melo HOM05D000445 ORTHO05D000314 5.2e-10 67.0 52 65.4
ECA074G0010 Erigeron canadensis HOM05D000445 ORTHO05D000314 6.8e-10 66.6 52 65.4
ECA169G0002 Erigeron canadensis HOM05D000445 ORTHO05D000314 6.8e-10 66.6 52 65.4
Gorai.002G182400 Gossypium raimondii HOM05D000445 ORTHO05D000314 2.0e-09 65.1 51 62.7
Glyma.16G065300 Glycine max HOM05D000445 ORTHO05D000314 2.6e-09 64.7 51 66.7
Gorai.010G075500 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.4e-09 64.3 52 65.4
Medtr0689s0010 Medicago truncatula HOM05D000445 ORTHO05D000314 3.4e-09 64.3 52 65.4
RcHm_v2.0_Chr2g0102151 Rosa chinensis HOM05D000445 ORTHO05D000314 5.8e-09 63.5 52 63.5
Ah.10g028850 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.5e-09 63.2 37 75.7
RcHm_v2.0_Chr2g0118431 Rosa chinensis HOM05D000445 ORTHO05D000314 9.8e-09 62.8 52 61.5
arahy.Tifrunner.gnm1.ann1.P4UTRN Arachis hypogaea HOM05D000445 ORTHO05D000090 1.3e-08 62.4 36 77.8
HanXRQChr00c0585g0576211 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-08 62.4 37 75.7
Nitab4.5_0001946g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.3e-08 62.4 52 65.4
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 2.2e-08 61.6 50 64.0
Peaxi162Scf00040g00123 Petunia axillaris HOM05D000445 ORTHO05D000314 2.2e-08 61.6 52 63.5
Peaxi162Scf00299g00612 Petunia axillaris HOM05D000445 ORTHO05D000314 2.2e-08 61.6 52 63.5
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 2.9e-08 61.2 57 59.6
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 2.9e-08 61.2 57 59.6
COL.COLO4_00410 Corchorus olitorius HOM05D000445 ORTHO05D000314 3.7e-08 60.8 49 67.3
Lsat_1_v5_gn_9_18681 Lactuca sativa HOM05D000445 ORTHO05D000314 4.9e-08 60.5 50 60.0
Nitab4.5_0000223g0180 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.9e-08 60.5 59 61.0
arahy.Tifrunner.gnm1.ann1.VZ62BS Arachis hypogaea HOM05D000445 ORTHO05D000314 6.4e-08 60.1 43 69.8
Gohir.D05G322050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 49 63.3
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc00g500304.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc02g011920.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 51 66.7
Solyc09g061465.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Solyc11g063577.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
PGSC0003DMG400015064 Solanum tuberosum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
PGSC0003DMG400020533 Solanum tuberosum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
PGSC0003DMG400020691 Solanum tuberosum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
PGSC0003DMG400046719 Solanum tuberosum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
PGSC0003DMG402024143 Solanum tuberosum HOM05D000445 ORTHO05D000314 6.4e-08 60.1 52 63.5
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.3e-08 59.7 52 63.5
Gorai.009G345600 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.1e-07 59.3 49 63.3
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-07 59.3 50 60.0
Lsat_1_v5_gn_3_104600 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-07 59.3 50 60.0
Lsat_1_v5_gn_7_920 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-07 59.3 50 60.0
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-07 59.3 50 60.0
CAN.G547.18 Capsicum annuum HOM05D000445 ORTHO05D000314 1.9e-07 58.5 60 56.7
QL01p047310 Quercus lobata HOM05D000445 ORTHO05D000314 1.9e-07 58.5 40 72.5
Solyc00g500239.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.4e-07 58.2 51 62.7
arahy.Tifrunner.gnm1.ann1.HKSX5Z Arachis hypogaea HOM05D000445 ORTHO05D000314 4.1e-07 57.4 43 62.8
BolC6t37542H Brassica oleracea HOM05D000477 ORTHO05D000338 9.2e-07 56.2 39 69.2
Gorai.005G222000 Gossypium raimondii HOM05D000445 ORTHO05D000314 9.2e-07 56.2 51 56.9
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.2e-06 55.8 54 57.4
Solyc04g039770.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-06 55.5 52 57.7
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.1e-06 55.1 53 58.5
Dinv03865 Davidia involucrata HOM05D000445 ORTHO05D000314 3.5e-06 54.3 39 69.2
Sed0004640 Sechium edule HOM05D000445 ORTHO05D000314 4.6e-06 53.9 28 82.1
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 4.6e-06 53.9 28 82.1
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 6.0e-06 53.5 44 65.9
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 6.0e-06 53.5 28 82.1
Phvul.007G139100 Phaseolus vulgaris HOM05D000445 ORTHO05D000314 6.0e-06 53.5 42 66.7
Lsat_1_v5_gn_4_147961 Lactuca sativa HOM05D000445 ORTHO05D000314 7.8e-06 53.1 48 58.3
Solyc08g029400.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.8e-06 53.1 52 57.7


User provided reference genes

Program Settings