Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 6.0e-49 197.2 101 100.0
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 7.6e-36 153.7 102 80.4
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 2.7e-33 145.2 101 74.3
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 6.1e-33 144.1 101 75.2
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.4e-29 132.1 101 69.3
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.0e-24 116.7 101 60.4
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 3.3e-23 111.7 101 60.4
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.3e-22 109.8 101 57.4
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.2e-22 109.0 101 61.4
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.4e-21 105.5 101 61.4
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.1e-21 105.1 102 54.9
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 3.1e-21 105.1 101 58.4
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 4.1e-21 104.8 102 55.9
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 6.9e-21 104.0 100 56.0
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.2e-20 103.2 101 60.4
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 1.7e-19 99.4 94 57.4
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 2.9e-19 98.6 106 51.9
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.8e-19 98.2 102 54.9
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.4e-18 96.3 106 53.8
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.9e-18 95.9 101 54.5
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.9e-18 95.9 81 64.2
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 7.2e-18 94.0 101 53.5
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 9.4e-18 93.6 107 52.3
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.1e-17 92.4 103 55.3
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 2.7e-17 92.0 96 56.2
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.7e-17 92.0 102 53.9
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.7e-17 91.3 102 52.9
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 6.1e-17 90.9 102 52.9
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.1e-17 90.9 102 52.9
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 7.9e-17 90.5 101 53.5
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.8e-16 89.4 102 52.0
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.8e-16 89.4 104 52.9
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 3.0e-16 88.6 103 50.5
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 3.9e-16 88.2 105 52.4
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.1e-16 87.8 101 49.5
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.6e-15 85.5 101 49.5
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 3.3e-15 85.1 101 49.5
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 4.4e-15 84.7 96 53.1
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 7.4e-15 84.0 94 51.1
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 9.7e-15 83.6 97 52.6
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.7e-14 82.8 94 48.9
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 2.2e-14 82.4 102 51.0
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 2.2e-14 82.4 102 51.0
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.2e-14 82.4 105 49.5
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 3.7e-14 81.6 102 52.0
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 3.7e-14 81.6 92 53.3
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 3.7e-14 81.6 101 52.5
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.8e-14 81.3 94 51.1
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 6.3e-14 80.9 80 60.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 6.3e-14 80.9 101 49.5
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 8.2e-14 80.5 101 45.5
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-13 79.7 101 46.5
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.8e-13 79.3 104 51.0
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.8e-13 79.3 102 48.0
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.4e-13 79.0 91 49.5
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 4.1e-13 78.2 92 46.7
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 5.3e-13 77.8 98 49.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 7.0e-13 77.4 103 46.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 7.0e-13 77.4 55 65.5
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 9.1e-13 77.0 94 47.9
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 9.1e-13 77.0 94 46.8
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.2e-12 76.6 92 48.9
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.2e-12 76.6 93 44.1
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.6e-12 76.3 94 46.8
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.6e-12 76.3 103 50.5
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.6e-12 76.3 94 45.7
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.6e-12 76.3 101 49.5
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 2.6e-12 75.5 102 44.1
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.6e-12 75.5 102 51.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 5.9e-12 74.3 94 45.7
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 7.7e-12 73.9 103 49.5
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 7.7e-12 73.9 103 49.5
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.0e-11 73.6 102 46.1
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.9e-11 72.0 58 58.6
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 5.0e-11 71.2 57 61.4
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 5.0e-11 71.2 51 68.6
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 5.0e-11 71.2 89 47.2
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.9e-10 69.3 72 52.8
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 4.2e-10 68.2 95 44.2
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 4.2e-10 68.2 50 68.0
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 4.2e-10 68.2 58 60.3
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 7.2e-10 67.4 103 46.6
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 7.2e-10 67.4 101 45.5
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.6e-09 66.2 92 44.6
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 2.1e-09 65.9 93 43.0
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 2.1e-09 65.9 65 52.3
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 4.7e-09 64.7 97 42.3
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 4.7e-09 64.7 93 40.9
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 6.1e-09 64.3 50 64.0
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 6.1e-09 64.3 93 47.3
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.1e-09 64.3 104 44.2
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.0e-09 63.9 104 45.2
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.0e-08 63.5 97 40.2
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.0e-08 63.5 89 44.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 2.3e-08 62.4 50 62.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.0e-08 61.6 58 55.2
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 8.8e-08 60.5 50 58.0
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 8.8e-08 60.5 50 60.0
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 8.8e-08 60.5 50 60.0
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 8.8e-08 60.5 91 45.1
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 8.8e-08 60.5 101 39.6
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 102 39.2
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 100 39.0
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 100 39.0
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.1e-07 60.1 100 39.0
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.1e-07 60.1 50 58.0
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 1.5e-07 59.7 102 41.2
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.5e-07 59.7 50 60.0
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 2.0e-07 59.3 57 54.4
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 2.6e-07 58.9 96 41.7
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 3.3e-07 58.5 51 58.8
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 3.3e-07 58.5 100 37.0
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 3.3e-07 58.5 51 58.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 3.3e-07 58.5 51 58.8
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 3.3e-07 58.5 100 37.0
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.3e-07 58.5 104 43.3
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 4.4e-07 58.2 94 41.5
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 5.7e-07 57.8 102 41.2
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 9.7e-07 57.0 55 56.4
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.3e-06 56.6 72 48.6
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 1.3e-06 56.6 93 37.6
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.7e-06 56.2 101 43.6
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 1.7e-06 56.2 51 56.9
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 2.8e-06 55.5 68 47.1
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 2.8e-06 55.5 62 45.2
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 2.8e-06 55.5 62 45.2
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 3.7e-06 55.1 62 45.2
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 3.7e-06 55.1 62 45.2
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 6.3e-06 54.3 50 54.0
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 6.3e-06 54.3 50 54.0
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 6.3e-06 54.3 50 54.0
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 6.3e-06 54.3 50 54.0
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 6.3e-06 54.3 50 54.0
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 6.3e-06 54.3 58 53.4
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 6.3e-06 54.3 101 42.6


User provided reference genes

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