Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 4.6e-95 351.3 187 100.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 6.9e-83 310.8 187 87.2
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.2e-82 310.1 187 86.6
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.2e-79 300.1 193 84.5
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.6e-79 299.7 187 84.5
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 6.7e-78 294.3 191 84.3
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 8.8e-78 293.9 193 84.5
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.5e-77 293.1 193 82.9
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 2.0e-77 292.7 187 82.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.5e-77 292.4 187 81.3
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.2e-76 289.3 187 82.9
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 3.2e-72 275.4 163 88.3
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 7.9e-71 270.8 187 79.1
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 5.1e-70 268.1 195 75.9
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 2.6e-66 255.8 187 73.8
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 2.6e-66 255.8 187 73.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.9e-66 254.6 187 73.3
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.0e-65 253.8 190 72.6
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.9e-65 252.3 190 71.6
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.0e-65 251.5 186 73.1
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 6.5e-65 251.1 190 71.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.5e-64 250.0 190 70.5
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.9e-64 249.6 189 70.9
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 4.2e-64 248.4 190 71.6
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.5e-64 248.1 190 68.9
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 5.5e-64 248.1 190 69.5
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 7.2e-64 247.7 187 71.1
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 9.4e-64 247.3 191 71.2
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 9.4e-64 247.3 192 69.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.2e-63 246.9 180 71.1
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.6e-63 246.5 188 68.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.6e-63 246.5 193 69.4
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 2.1e-63 246.1 188 69.7
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.7e-63 245.7 177 71.8
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.6e-63 245.4 190 69.5
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.0e-62 243.8 189 69.3
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.8e-62 243.0 190 66.3
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.8e-62 243.0 190 68.9
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 3.0e-62 242.3 190 68.9
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.2e-62 241.5 190 68.4
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 5.2e-62 241.5 190 68.4
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 6.7e-62 241.1 188 69.1
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 8.8e-62 240.7 190 67.4
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 8.8e-62 240.7 190 67.4
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 8.8e-62 240.7 177 70.6
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.1e-61 240.4 195 67.2
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-61 240.4 195 66.7
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.5e-61 240.0 190 67.4
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.5e-61 240.0 169 79.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 2.0e-61 239.6 191 66.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.0e-61 239.6 188 69.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.0e-61 239.6 193 72.0
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.0e-61 239.6 190 67.9
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.6e-61 239.2 190 70.5
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 3.3e-61 238.8 184 67.4
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 4.4e-61 238.4 193 71.5
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 5.7e-61 238.0 192 66.7
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 5.7e-61 238.0 193 66.3
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 5.7e-61 238.0 200 66.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 5.7e-61 238.0 200 66.0
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 7.5e-61 237.7 187 67.9
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 7.5e-61 237.7 187 67.9
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-60 236.9 200 66.0
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 2.2e-60 236.1 192 66.7
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 2.2e-60 236.1 174 71.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.2e-60 236.1 180 68.9
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.2e-60 236.1 175 72.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 2.8e-60 235.7 190 65.3
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.8e-60 235.7 195 66.2
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.8e-60 235.7 192 66.7
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 3.7e-60 235.3 163 73.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 4.8e-60 235.0 155 76.1
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 4.8e-60 235.0 188 66.5
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 6.3e-60 234.6 189 67.7
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 8.2e-60 234.2 192 65.6
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 8.2e-60 234.2 192 65.6
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.4e-59 232.6 192 65.6
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.4e-59 232.6 164 78.0
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 3.1e-59 232.3 190 67.4
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 7.0e-59 231.1 192 63.5
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.2e-58 230.3 185 64.3
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.2e-58 230.3 185 66.5
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.2e-58 230.3 187 66.8
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.0e-58 229.6 187 65.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.6e-58 229.2 191 64.4
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.6e-58 229.2 169 71.0
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 3.5e-58 228.8 174 70.7
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.9e-58 228.0 193 63.7
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 5.9e-58 228.0 184 63.6
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 7.7e-58 227.6 191 63.9
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 7.7e-58 227.6 185 65.4
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 7.7e-58 227.6 178 67.4
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.0e-57 227.3 187 64.7
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.0e-57 227.3 187 64.7
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.3e-57 226.9 182 67.0
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.2e-57 226.1 187 64.2
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.8e-57 225.3 199 62.3
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.0e-57 224.9 187 64.2
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.0e-57 224.9 185 65.4
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 8.5e-57 224.2 166 68.1
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.5e-56 223.4 165 67.9
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.9e-56 223.0 192 61.5
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.9e-56 223.0 169 71.0
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 2.5e-56 222.6 186 65.1
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.5e-56 222.6 187 63.1
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.5e-56 222.6 162 69.8
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 3.2e-56 222.2 158 72.2
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.2e-56 222.2 187 63.1
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 5.5e-56 221.5 177 63.3
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 9.4e-56 220.7 151 73.5
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.6e-55 219.9 185 63.2
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.7e-55 219.2 177 65.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 3.6e-55 218.8 157 73.9
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.4e-54 216.9 206 58.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.3e-54 216.1 159 68.6
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 5.2e-54 214.9 207 58.0
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.2e-53 213.8 186 64.0
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.5e-53 213.4 200 59.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.6e-53 212.6 189 64.0
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 4.4e-53 211.8 175 65.1
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 7.5e-53 211.1 196 59.2
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 5.4e-51 204.9 195 57.4
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.2e-50 203.8 163 66.3
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.0e-50 203.0 185 61.6
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 5.9e-50 201.4 169 63.9
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.1e-47 193.0 255 48.6
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 2.6e-45 186.0 187 55.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 3.4e-45 185.7 181 58.6
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.8e-45 184.1 196 56.1
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.4e-43 180.3 158 60.8
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.6e-41 171.4 136 69.1
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 8.6e-41 171.0 151 60.9
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.8e-38 163.3 108 72.2
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.9e-38 161.0 172 55.8
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.6e-37 159.5 132 63.6
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 3.4e-37 159.1 235 45.1
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.7e-36 156.8 106 73.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 2.2e-36 156.4 168 47.6
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.7e-34 149.4 141 58.2
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.6e-34 148.7 130 59.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.0e-33 147.5 185 48.1
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-33 147.5 130 59.2
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.0e-33 146.0 126 60.3
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.0e-33 146.0 130 59.2
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.9e-33 145.6 146 47.3
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.0e-33 145.2 130 60.0
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 2.1e-31 139.8 157 47.1
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-30 137.1 91 69.2
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.8e-30 134.8 142 46.5
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.0e-29 133.3 184 42.4
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 2.0e-29 133.3 82 78.0
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-27 127.5 106 60.4
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.1e-27 127.5 133 50.4
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.9e-22 107.8 120 55.8
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.1e-18 96.7 180 37.2
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.3e-17 93.2 86 61.6
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.2e-13 80.9 57 66.7
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 5.6e-08 62.0 172 36.6
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 8.1e-07 58.2 105 43.8
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.8e-06 57.0 80 50.0


User provided reference genes

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