Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 0.0e+00 1832.4 951 100.0
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 0.0e+00 1139.8 1002 67.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.7e-265 918.7 1004 57.8
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 2.5e-229 799.7 765 63.4
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.7e-215 753.1 1138 47.0
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 1.0e-206 724.5 1138 46.0
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 2.1e-204 716.8 1112 45.7
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 6.2e-204 715.3 1121 46.1
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 4.0e-203 712.6 1153 45.6
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 2.5e-152 543.9 1182 37.6
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.1e-147 526.9 1175 38.1
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 5.2e-110 403.3 776 42.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 2.6e-101 374.4 1123 31.3
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.2e-94 350.1 1022 33.0
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.2e-93 349.0 1173 29.8
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.9e-92 343.6 1021 32.3
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 3.3e-88 330.9 1196 29.5
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 9.6e-80 302.8 1095 30.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 5.8e-77 293.5 1072 30.9
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 8.4e-76 289.7 1223 29.2
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.6e-74 285.4 1055 30.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 3.3e-72 277.7 1035 30.3
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 7.4e-72 276.6 1105 29.9
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.4e-69 267.7 1008 29.2
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.6e-66 258.8 1018 28.7
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.5e-64 251.5 1214 28.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.1e-63 248.4 1052 28.0
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.4e-62 245.0 1214 28.2
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 3.1e-62 244.6 1006 29.4
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 3.1e-62 244.6 1209 26.4
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 7.6e-61 240.0 1044 28.6
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.9e-59 235.3 993 28.7
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.2e-58 232.6 1037 28.2
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.5e-58 231.1 1007 29.7
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 6.0e-58 230.3 1120 27.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 6.0e-58 230.3 1034 27.6
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 3.0e-57 228.0 1084 28.8
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 6.7e-57 226.9 237 56.5
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 3.3e-56 224.6 1045 29.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 4.3e-56 224.2 1026 26.9
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 7.4e-56 223.4 1066 27.7
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 2.2e-55 221.9 1022 28.8
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 4.8e-55 220.7 992 28.8
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.4e-54 218.4 1000 28.5
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.6e-53 214.9 1101 27.2
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 2.6e-53 214.9 1013 27.6
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 7.7e-53 213.4 1125 26.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.2e-52 211.8 1286 27.1
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.1e-51 209.5 1026 26.6
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.2e-51 208.0 1119 27.7
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.6e-50 205.7 995 28.3
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.1e-50 205.3 1008 27.5
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.8e-49 202.2 1028 27.7
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.1e-48 199.5 1047 26.5
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.5e-48 198.4 1083 26.9
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 5.7e-48 197.2 1122 26.5
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.4e-48 196.8 990 27.3
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.7e-47 195.7 1071 26.7
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.7e-47 194.5 990 27.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 6.3e-47 193.7 588 30.6
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 1.8e-46 192.2 1073 27.0
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.9e-45 187.2 1002 26.9
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.1e-43 183.0 1043 26.7
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-43 182.6 311 43.1
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 3.2e-43 181.4 1088 26.5
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.2e-43 181.0 317 39.4
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 3.0e-41 174.9 575 31.1
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.1e-40 172.9 227 50.7
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.0e-40 172.2 615 30.7
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 2.6e-40 171.8 994 25.9
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.0e-38 163.7 536 33.0
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.0e-37 162.2 382 34.8
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 5.0e-36 157.5 1034 26.6
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.5e-35 155.2 1073 25.3
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 5.5e-35 154.1 241 44.0
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.2e-34 152.9 1073 25.4
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.3e-33 148.7 1084 24.4
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.9e-33 147.9 1080 25.1
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 3.3e-32 144.8 122 63.1
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.8e-31 141.7 741 29.1
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 5.3e-30 137.5 1205 23.3
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.0e-29 135.6 1103 24.1
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 2.6e-29 135.2 170 48.2
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.6e-29 135.2 998 25.4
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.6e-29 135.2 795 26.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.7e-28 132.5 227 39.6
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-27 129.8 795 25.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.5e-27 129.4 542 27.1
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 3.2e-27 128.3 861 27.1
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 3.2e-27 128.3 125 56.0
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 3.6e-26 124.8 507 28.8
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 6.1e-26 124.0 767 25.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 3.0e-25 121.7 1139 23.7
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.0e-24 119.0 258 39.5
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 7.5e-24 117.1 961 23.5
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 7.5e-24 117.1 984 23.9
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.3e-23 116.3 373 30.0
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.1e-22 113.2 754 25.1
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.0e-21 109.0 130 46.2
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 2.7e-21 108.6 976 24.1
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.7e-21 108.6 954 25.2
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.3e-20 106.3 976 22.4
Ca_13654_v3 Cicer arietinum L. HOM05D000161 ORTHO05D000111 1.7e-20 105.9 248 34.7
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 3.8e-20 104.8 930 24.8
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 8.5e-20 103.6 954 24.2
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 1.5e-19 102.8 101 53.5
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.4e-19 100.1 699 24.3
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.0e-17 96.7 980 23.0
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.4e-17 96.3 796 25.6
arahy.Tifrunner.gnm1.ann1.JXU29S Arachis hypogaea HOM05D005839 ORTHO05D005686 2.3e-17 95.5 245 34.3
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 4.0e-17 94.7 58 70.7
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 1.2e-16 93.2 974 23.8
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.5e-16 92.8 238 30.7
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.0e-16 92.4 65 70.8
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.4e-16 91.7 976 23.7
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 9.8e-16 90.1 134 41.0
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 9.8e-16 90.1 134 41.8
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 4.8e-15 87.8 1012 23.5
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 6.3e-15 87.4 86 51.2
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.8e-14 85.9 207 35.3
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 9.1e-14 83.6 223 33.6
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 2.7e-13 82.0 414 28.0
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.7e-13 82.0 1007 23.2
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 3.5e-13 81.6 977 23.1
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.0e-12 80.1 588 23.8
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.3e-12 79.7 159 34.6
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.3e-12 79.7 159 34.6
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.7e-12 79.3 348 25.6
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.7e-12 79.3 975 21.6
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 2.9e-12 78.6 114 40.4
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 5.0e-12 77.8 218 30.7
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.0e-12 77.8 470 27.2
arahy.Tifrunner.gnm1.ann1.TC2NGU Arachis hypogaea HOM05D010837 ORTHO05D007788 6.6e-12 77.4 106 41.5
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 6.6e-12 77.4 68 55.9
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.1e-11 76.6 214 32.2
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 3.3e-11 75.1 968 23.0
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 4.2e-11 74.7 970 22.8
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.6e-10 72.8 983 23.0
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.0e-09 70.1 46 60.9
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.4e-09 69.7 982 22.6
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 8.9e-09 67.0 34 73.5
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 1.2e-08 66.6 180 25.0
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 7.5e-08 63.9 34 64.7
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 3.7e-07 61.6 129 28.7
AagrBONN_evm.TU.Sc2ySwM_344.2400 Anthoceros agrestis HOM05D010750 ORTHO05D005686 1.4e-06 59.7 43 53.5
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 1.4e-06 59.7 61 49.2
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 2.4e-06 58.9 587 23.7


User provided reference genes

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