Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 2.7e-32 141.4 70 100.0
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 2.7e-32 141.4 70 100.0
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 7.9e-32 139.8 70 98.6
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.8e-31 138.7 70 97.1
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 4.2e-17 90.9 52 86.5
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 2.7e-16 88.2 52 84.6
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 4.7e-16 87.4 52 82.7
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 1.1e-14 82.8 48 83.3
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.0e-14 82.0 52 73.1
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.0e-14 82.0 52 73.1
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 2.0e-14 82.0 53 81.1
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 2.0e-14 82.0 48 85.4
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 4.4e-14 80.9 52 73.1
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 4.4e-14 80.9 53 81.1
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 5.7e-14 80.5 51 74.5
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 1.3e-13 79.3 48 83.3
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 2.2e-13 78.6 48 77.1
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 1.1e-12 76.3 47 78.7
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 1.4e-12 75.9 48 79.2
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 5.9e-11 70.5 52 57.7
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 7.7e-11 70.1 52 61.5
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.7e-10 68.9 48 64.6
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 1.7e-10 68.9 46 73.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 3.8e-10 67.8 57 57.9
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 3.8e-10 67.8 46 71.7
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 8.5e-10 66.6 52 59.6
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 1.5e-09 65.9 52 61.5
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 1.5e-09 65.9 52 65.4
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.5e-09 65.9 52 65.4
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.9e-09 65.5 44 65.9
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 3.2e-09 64.7 48 62.5
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.2e-09 64.7 53 58.5
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.2e-09 64.7 56 60.7
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.2e-09 64.7 56 60.7
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 3.2e-09 64.7 46 63.0
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 3.2e-09 64.7 50 68.0
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 3.2e-09 64.7 46 65.2
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 4.2e-09 64.3 52 57.7
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 5.5e-09 63.9 48 62.5
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 5.5e-09 63.9 52 63.5
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 5.5e-09 63.9 52 63.5
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.5e-09 63.9 48 64.6
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 5.5e-09 63.9 52 55.8
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 5.5e-09 63.9 44 65.9
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 5.5e-09 63.9 54 59.3
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 9.4e-09 63.2 48 64.6
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 9.4e-09 63.2 48 60.4
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 9.4e-09 63.2 52 63.5
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.2e-08 62.8 52 63.5
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.2e-08 62.8 52 63.5
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.2e-08 62.8 48 58.3
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.2e-08 62.8 48 58.3
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.2e-08 62.8 48 58.3
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.2e-08 62.8 57 59.6
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.6e-08 62.4 48 64.6
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 2.1e-08 62.0 48 56.2
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 2.1e-08 62.0 46 63.0
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.1e-08 62.0 46 60.9
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 2.1e-08 62.0 62 53.2
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 2.7e-08 61.6 48 60.4
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 2.7e-08 61.6 44 65.9
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.7e-08 61.6 59 50.8
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 3.6e-08 61.2 50 62.0
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 3.6e-08 61.2 43 72.1
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.6e-08 61.2 46 60.9
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 4.7e-08 60.8 52 57.7
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 4.7e-08 60.8 48 64.6
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 4.7e-08 60.8 44 63.6
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.7e-08 60.8 46 60.9
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 6.1e-08 60.5 48 58.3
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 6.1e-08 60.5 48 58.3
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 6.1e-08 60.5 48 58.3
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 6.1e-08 60.5 48 58.3
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 6.1e-08 60.5 52 63.5
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 8.0e-08 60.1 53 52.8
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 1.0e-07 59.7 56 53.6
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.0e-07 59.7 46 60.9
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.0e-07 59.7 46 60.9
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 1.4e-07 59.3 48 60.4
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.4e-07 59.3 52 51.9
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.4e-07 59.3 53 52.8
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.4e-07 59.3 48 60.4
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.8e-07 58.9 47 59.6
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.8e-07 58.9 46 60.9
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 1.8e-07 58.9 46 60.9
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 1.8e-07 58.9 46 60.9
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.8e-07 58.9 46 58.7
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.8e-07 58.9 46 58.7
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 2.3e-07 58.5 46 58.7
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.3e-07 58.5 63 46.0
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 3.0e-07 58.2 48 58.3
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 3.0e-07 58.2 48 58.3
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 3.0e-07 58.2 48 58.3
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 3.0e-07 58.2 48 58.3
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 3.0e-07 58.2 46 60.9
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.0e-07 58.2 45 55.6
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 3.0e-07 58.2 44 61.4
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.0e-07 58.2 39 66.7
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 4.0e-07 57.8 50 56.0
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 4.0e-07 57.8 37 75.7
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 5.2e-07 57.4 46 60.9
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 5.2e-07 57.4 48 56.2
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 5.2e-07 57.4 37 75.7
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 5.2e-07 57.4 39 69.2
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.2e-06 56.2 39 69.2
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.5e-06 55.8 42 59.5
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.0e-06 55.5 60 55.0
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.0e-06 55.5 60 55.0
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.0e-06 55.5 60 55.0
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.6e-06 55.1 41 68.3
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 3.3e-06 54.7 39 66.7
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 3.3e-06 54.7 40 65.0
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 3.3e-06 54.7 38 63.2
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 4.4e-06 54.3 48 56.2
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 5.7e-06 53.9 59 44.1
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 7.5e-06 53.5 52 48.1


User provided reference genes

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