Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 7.8e-222 773.9 503 100.0
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.5e-127 459.9 492 74.4
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 3.8e-120 436.0 525 60.2
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.7e-112 410.6 524 51.7
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 2.2e-107 393.7 522 53.4
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.5e-105 386.3 519 52.2
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 8.6e-104 381.7 534 53.2
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 9.5e-103 378.3 535 52.5
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.8e-102 376.7 531 52.0
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.6e-100 370.2 575 51.1
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 2.4e-98 363.6 581 47.8
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 2.4e-98 363.6 535 56.4
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 7.6e-84 315.5 537 51.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 3.3e-79 300.1 411 50.4
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.3e-79 298.9 195 75.4
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.3e-79 298.9 195 75.4
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.3e-79 298.9 195 75.4
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 2.1e-78 297.4 324 55.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.8e-78 297.0 436 44.5
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 2.8e-78 297.0 341 56.9
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 6.2e-78 295.8 403 47.1
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.4e-77 294.7 493 45.4
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.8e-77 294.3 195 73.8
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.8e-77 294.3 314 57.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 2.4e-77 293.9 195 73.8
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 5.2e-77 292.7 359 52.9
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 1.5e-76 291.2 318 54.4
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 2.0e-76 290.8 310 55.5
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.6e-76 290.4 366 47.0
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 5.8e-76 289.3 382 49.2
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 5.8e-76 289.3 427 46.4
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 7.6e-76 288.9 406 45.1
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 9.9e-76 288.5 440 45.2
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.3e-75 288.1 366 56.3
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.3e-75 288.1 390 46.2
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.9e-75 287.0 209 68.9
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 3.8e-75 286.6 425 46.8
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 4.9e-75 286.2 193 74.1
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 6.4e-75 285.8 408 44.4
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 1.4e-74 284.6 324 54.6
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 1.9e-74 284.3 381 46.5
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 2.4e-74 283.9 428 46.3
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 3.2e-74 283.5 193 72.5
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.4e-74 282.7 404 44.3
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 7.1e-74 282.3 336 50.6
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 9.3e-74 282.0 354 54.2
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 9.3e-74 282.0 315 55.2
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.2e-73 281.6 369 49.1
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 2.1e-73 280.8 332 56.6
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 3.5e-73 280.0 417 44.8
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 4.6e-73 279.6 415 43.9
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 7.8e-73 278.9 191 71.2
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.3e-72 277.3 418 43.3
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.3e-72 277.3 411 44.8
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 3.0e-72 276.9 379 44.3
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.5e-71 274.6 419 45.3
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 4.3e-71 273.1 389 48.6
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 5.6e-71 272.7 415 44.8
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.3e-70 271.6 382 47.6
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 6.2e-70 269.2 338 54.4
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 1.4e-69 268.1 306 54.2
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 5.3e-69 266.2 415 43.4
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 1.5e-68 264.6 191 68.1
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 9.9e-68 261.9 192 67.7
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.7e-67 261.2 435 43.9
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 2.9e-67 260.4 376 47.1
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.9e-66 257.7 418 45.7
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 3.2e-66 256.9 307 50.2
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 6.0e-65 252.7 208 62.0
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.8e-64 251.1 208 62.0
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 1.8e-64 251.1 208 62.0
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.3e-64 250.8 194 65.5
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.0e-64 250.4 372 42.5
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 5.1e-64 249.6 384 44.5
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 8.7e-64 248.8 437 41.0
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 8.7e-64 248.8 381 44.9
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-63 248.4 420 42.1
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.9e-63 247.7 208 61.5
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 2.5e-63 247.3 208 61.5
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.3e-63 246.9 341 46.9
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 3.3e-63 246.9 191 62.8
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 5.6e-63 246.1 397 40.1
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 5.6e-63 246.1 208 61.1
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 9.6e-63 245.4 391 41.9
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 2.1e-62 244.2 294 49.3
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 3.7e-62 243.4 420 41.0
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 3.7e-62 243.4 309 50.2
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.8e-61 241.1 187 64.7
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 2.4e-61 240.7 188 64.9
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.0e-61 240.0 206 56.3
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 4.0e-61 240.0 191 58.1
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.0e-60 237.7 194 63.4
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.6e-60 235.7 381 40.4
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 9.9e-60 235.3 166 69.9
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 6.4e-59 232.6 401 44.4
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 6.4e-59 232.6 404 42.3
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 6.4e-59 232.6 341 43.7
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.4e-58 231.5 323 44.6
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 3.2e-58 230.3 365 43.0
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.6e-57 228.0 367 43.1
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.1e-57 227.6 200 53.5
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 7.9e-57 225.7 165 69.1
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 2.3e-56 224.2 237 52.7
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 3.9e-56 223.4 404 42.8
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 1.2e-49 201.8 166 62.7
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.0e-43 182.2 177 54.8
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.0e-43 182.2 177 54.8
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 8.5e-43 179.1 139 65.5
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 3.9e-40 170.2 111 72.1
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 3.7e-38 163.7 107 71.0
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 3.4e-36 157.1 329 41.6
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.7e-35 154.8 608 28.6
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.5e-34 151.0 347 36.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 7.9e-33 146.0 90 75.6
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 6.7e-32 142.9 139 56.8
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.3e-29 133.3 91 71.4
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 5.3e-21 106.7 167 35.3
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.0e-20 104.8 170 33.5
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.5e-20 104.0 143 35.7
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.7e-20 102.8 64 75.0
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-18 99.0 319 32.0
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 7.2e-18 96.3 63 73.0
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.6e-17 95.1 62 75.8
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 2.3e-16 91.3 62 69.4
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 4.4e-15 87.0 63 69.8
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 7.5e-15 86.3 82 48.8
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.4e-13 81.3 301 30.2
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 2.8e-06 57.8 262 27.1


User provided reference genes

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