Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 2.5e-120 435.6 253 100.0
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.2e-69 267.3 184 84.2
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.5e-67 259.6 176 84.1
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 2.7e-58 229.6 178 74.7
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 1.0e-57 227.6 178 75.3
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 4.0e-57 225.7 172 75.0
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 2.2e-55 219.9 181 71.8
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 3.7e-55 219.2 178 70.8
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 3.7e-55 219.2 172 74.4
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 4.8e-55 218.8 178 72.5
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 1.0e-52 211.1 180 66.1
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 1.0e-52 211.1 180 66.1
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 5.5e-51 205.3 193 66.3
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 9.5e-51 204.5 203 63.1
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 1.6e-50 203.8 186 64.5
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 2.8e-50 203.0 183 66.1
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 8.9e-49 198.0 186 64.0
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.5e-48 197.2 190 64.2
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 2.0e-48 196.8 181 63.0
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 2.6e-48 196.4 182 63.2
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.4e-48 195.7 181 63.0
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 4.4e-48 195.7 190 63.2
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 7.5e-48 194.9 178 63.5
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 7.5e-48 194.9 181 62.4
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.7e-47 193.7 181 64.1
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.2e-47 193.4 186 62.4
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.8e-47 193.0 186 62.9
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.7e-47 192.6 181 62.4
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.9e-47 192.2 181 62.4
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 4.9e-47 192.2 126 84.9
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.8e-46 190.3 179 62.0
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 4.1e-46 189.1 183 62.8
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 5.4e-46 188.7 179 63.7
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 7.0e-46 188.3 183 62.3
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.6e-45 187.2 182 61.5
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.6e-45 187.2 182 61.5
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 2.0e-45 186.8 189 60.3
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.5e-45 186.0 184 61.4
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 4.5e-45 185.7 185 62.2
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 7.8e-45 184.9 187 63.1
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 1.0e-44 184.5 180 62.2
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.0e-44 184.5 184 61.4
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.3e-44 184.1 178 60.7
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.3e-44 184.1 184 60.9
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.7e-44 183.7 183 61.2
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 2.3e-44 183.3 181 63.5
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.9e-44 183.0 139 74.8
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.9e-44 183.0 192 61.5
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 3.8e-44 182.6 185 61.6
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 3.8e-44 182.6 183 59.0
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 1.1e-43 181.0 186 59.1
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.9e-43 180.3 186 60.8
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 3.3e-43 179.5 147 68.7
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 7.3e-43 178.3 191 57.6
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 7.3e-43 178.3 189 59.8
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 9.5e-43 177.9 177 60.5
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 9.5e-43 177.9 194 58.8
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 9.5e-43 177.9 186 59.7
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 1.2e-42 177.6 189 58.7
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 1.6e-42 177.2 180 60.0
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.1e-42 176.8 189 58.7
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.8e-41 173.7 161 62.1
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 5.2e-41 172.2 189 55.6
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 5.2e-41 172.2 182 60.4
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 5.2e-41 172.2 191 55.5
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 8.9e-41 171.4 183 55.2
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 8.9e-41 171.4 181 60.2
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 1.2e-40 171.0 188 57.4
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.5e-40 170.6 179 58.7
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 2.0e-40 170.2 182 56.6
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 3.4e-40 169.5 180 59.4
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 4.4e-40 169.1 190 58.4
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 5.8e-40 168.7 181 56.9
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 2.9e-39 166.4 232 49.1
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 4.9e-39 165.6 186 54.8
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 8.3e-39 164.9 189 54.0
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 8.3e-39 164.9 187 56.1
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 1.1e-38 164.5 181 55.8
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.1e-38 164.5 180 56.1
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.1e-38 164.5 180 56.1
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.4e-38 164.1 188 54.3
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.8e-38 163.7 142 66.2
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 4.1e-38 162.5 183 57.4
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 4.1e-38 162.5 183 57.4
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 5.4e-38 162.2 175 56.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 7.0e-38 161.8 183 57.4
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 9.2e-38 161.4 185 55.1
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.2e-37 161.0 181 54.7
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 1.2e-37 161.0 188 54.8
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 3.5e-37 159.5 188 54.3
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 3.5e-37 159.5 181 54.1
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 1.3e-36 157.5 188 54.3
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 3.0e-36 156.4 195 53.3
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.9e-36 156.0 160 60.0
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 6.6e-36 155.2 180 52.2
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 8.6e-36 154.8 186 50.5
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 4.3e-35 152.5 180 53.9
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 4.3e-35 152.5 180 52.8
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.4e-33 147.5 190 50.0
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 3.1e-33 146.4 196 52.0
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.9e-31 139.8 185 53.0
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.7e-31 139.4 189 52.4
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 6.4e-31 138.7 190 51.6
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 8.3e-31 138.3 185 52.4
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.4e-30 137.5 128 60.9
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 7.8e-29 131.7 123 55.3
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.7e-28 130.6 96 75.0
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 5.0e-28 129.0 95 74.7
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.5e-27 127.5 179 48.6
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 5.6e-27 125.6 124 58.9
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 4.7e-26 122.5 95 72.6
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 8.1e-26 121.7 248 38.3
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 1.1e-25 121.3 124 59.7
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 5.2e-25 119.0 177 48.6
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 6.8e-25 118.6 126 54.8
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 2.6e-24 116.7 136 55.9
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 2.6e-24 116.7 127 56.7
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.8e-24 115.5 159 45.9
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 9.9e-24 114.8 90 72.2
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.4e-22 110.9 157 48.4
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 3.2e-22 109.8 140 49.3
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.1e-21 107.1 181 46.4
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 1.5e-16 90.9 96 56.2
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 4.9e-15 85.9 67 62.7
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 3.2e-14 83.2 105 49.5
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.1e-14 82.0 64 76.6
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 3.9e-12 76.3 126 44.4
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 6.6e-12 75.5 100 47.0
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 1.4e-09 67.8 106 39.6
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 5.2e-09 65.9 64 56.2
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 6.9e-09 65.5 81 50.6
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 9.0e-09 65.1 56 69.6
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 9.0e-09 65.1 80 48.8
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 9.0e-09 65.1 80 48.8
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 3.2e-06 56.6 60 55.0


User provided reference genes

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