Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 0.0e+00 1105.9 589 100.0
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.5e-304 1048.9 586 91.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.4e-299 1030.4 589 89.3
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 4.1e-283 977.6 542 91.5
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 6.0e-282 973.8 538 90.3
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.0e-281 973.0 530 91.9
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.9e-281 971.1 528 91.9
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.5e-280 969.1 536 90.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.1e-278 963.0 527 91.8
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 7.6e-277 956.8 526 91.6
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.4e-275 951.8 560 87.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.0e-274 947.2 535 90.1
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 2.8e-271 938.3 526 90.5
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.9e-267 925.6 548 86.1
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.7e-266 921.8 555 84.9
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.8e-265 919.1 568 82.0
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.9e-265 917.9 538 86.8
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.9e-264 915.6 546 84.6
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 4.3e-264 914.4 550 84.0
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 7.4e-264 913.7 535 86.5
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 9.6e-264 913.3 548 83.9
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.1e-263 912.1 554 84.3
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 5.3e-262 907.5 549 84.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.9e-262 907.1 552 83.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.2e-261 906.4 552 83.3
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.2e-261 906.4 540 83.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 5.8e-261 904.0 529 86.4
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.9e-261 903.3 552 83.2
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 4.9e-260 901.0 540 83.7
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 8.4e-260 900.2 520 87.9
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.1e-259 899.8 546 83.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.1e-259 899.8 542 83.4
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.4e-259 899.4 521 86.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.4e-259 899.4 524 86.8
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.2e-259 898.3 530 84.9
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 4.2e-259 897.9 549 82.3
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.1e-259 897.1 537 84.7
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.2e-258 896.3 528 84.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.6e-258 896.0 523 84.7
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.1e-258 895.6 543 82.9
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 7.9e-258 893.6 525 86.3
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.0e-257 893.3 538 84.6
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.8e-257 892.5 526 84.8
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 3.3e-256 888.3 555 81.4
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.3e-255 886.3 547 82.4
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.6e-255 885.9 556 80.8
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.6e-255 885.9 531 84.0
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.1e-255 885.6 533 83.3
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 2.1e-255 885.6 533 83.5
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 4.8e-255 884.4 530 83.6
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.4e-254 882.9 507 87.2
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.4e-254 882.1 528 83.7
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.4e-254 882.1 532 83.1
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.1e-254 881.7 536 82.8
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 3.1e-254 881.7 560 80.5
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 4.0e-254 881.3 536 83.2
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.0e-254 881.3 539 82.0
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 4.0e-254 881.3 538 83.1
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 4.0e-254 881.3 527 84.4
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 5.3e-254 880.9 538 82.5
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 5.3e-254 880.9 538 82.5
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 9.0e-254 880.2 554 81.8
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 2.6e-253 878.6 538 82.3
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 2.6e-253 878.6 538 82.3
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 2.6e-253 878.6 538 82.3
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.6e-253 878.6 532 82.5
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 7.6e-253 877.1 549 81.6
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 7.6e-253 877.1 530 83.0
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-252 875.5 538 82.3
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.2e-252 875.5 526 83.8
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 6.5e-252 874.0 529 81.7
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.1e-251 873.2 530 81.7
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.9e-251 872.5 530 82.8
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 2.5e-251 872.1 538 81.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.2e-251 871.7 522 83.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 7.1e-251 870.5 545 80.6
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-250 868.6 545 81.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-249 866.7 537 82.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 2.3e-249 865.5 540 81.7
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 6.7e-249 864.0 532 81.8
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.3e-248 861.7 531 81.4
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.1e-247 859.0 531 80.8
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.1e-247 859.0 535 80.7
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.1e-246 855.1 533 80.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.3e-246 854.4 550 80.0
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-245 853.2 553 79.6
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.4e-245 851.7 564 77.3
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.4e-245 851.7 515 82.9
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.5e-245 851.3 536 79.7
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.0e-244 850.1 546 80.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.5e-243 844.3 524 79.4
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 5.5e-243 844.3 538 78.6
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.6e-242 842.8 528 80.9
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.8e-241 839.3 537 78.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.3e-241 839.0 531 79.8
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 5.7e-240 834.3 513 81.3
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-236 822.4 542 78.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-234 816.6 423 96.7
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.6e-232 808.9 459 88.2
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.3e-231 806.6 542 75.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 4.8e-231 804.7 506 79.6
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 9.1e-230 800.4 457 86.9
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.4e-227 793.1 530 78.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.2e-227 790.8 463 85.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 8.8e-225 783.9 539 72.9
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.8e-222 776.2 506 77.5
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 2.0e-221 772.7 503 74.6
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.9e-219 766.1 491 75.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.2e-218 763.5 472 81.6
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 8.0e-218 760.8 502 73.5
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.0e-209 733.8 428 83.9
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 4.0e-209 731.9 426 83.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 9.5e-203 710.7 513 68.8
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.6e-202 709.9 509 72.7
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-198 696.8 525 68.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 9.2e-198 694.1 517 65.8
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 6.1e-194 681.4 537 68.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.3e-188 662.9 536 66.8
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 4.3e-187 658.7 489 64.8
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.5e-184 650.2 456 72.6
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.1e-182 644.0 514 63.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 9.5e-179 630.9 523 66.3
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 3.9e-164 582.4 318 90.9
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.9e-164 582.4 543 59.1
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 6.9e-161 571.6 523 58.5
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.3e-159 567.4 480 62.7
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.2e-159 566.6 503 59.8
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.9e-159 565.5 503 59.6
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.4e-158 563.9 405 67.7
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.0e-156 556.2 499 59.1
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.5e-155 553.1 352 81.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-136 490.7 500 53.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.7e-133 479.9 331 71.6
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.5e-123 447.6 493 47.5
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.5e-115 421.0 567 48.1
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.9e-102 377.5 528 39.8
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.8e-100 368.6 436 49.8
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 9.1e-89 332.0 445 40.2
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-88 331.6 350 55.7
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.9e-70 271.2 184 71.2
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 7.3e-70 269.2 167 82.6
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.0e-67 261.2 544 37.5
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.4e-59 233.4 256 50.0
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.8e-52 209.5 397 37.0
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 3.9e-47 193.7 142 69.7
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.8e-45 186.8 105 89.5
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 6.6e-39 166.4 118 78.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.1e-38 165.6 105 81.9
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.6e-37 161.8 96 88.5
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.4e-35 154.1 199 48.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-34 152.1 134 72.4
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.7e-32 144.4 126 56.3
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 7.9e-32 142.9 80 86.2
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.0e-26 125.9 84 78.6
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 6.5e-26 123.2 65 96.9
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 4.8e-21 107.1 87 63.2
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.0e-19 101.7 54 96.3
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.3e-18 99.0 71 73.2
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.0e-15 89.4 50 86.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 3.3e-14 84.3 52 80.8
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.4e-12 79.0 50 74.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.1e-12 77.8 49 77.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 4.1e-12 77.4 77 55.8
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 1.1e-09 69.3 43 76.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 4.3e-06 57.4 52 55.8
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 9.7e-06 56.2 110 37.3


User provided reference genes

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