Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 1.5e-65 252.7 126 100.0
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 8.3e-56 220.3 122 89.3
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 9.5e-52 206.8 124 83.9
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 1.4e-39 166.4 137 69.3
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 2.4e-39 165.6 135 68.9
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 2.7e-38 162.2 135 68.9
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 7.8e-38 160.6 135 68.1
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 1.3e-37 159.8 134 68.7
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 6.6e-37 157.5 135 66.7
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 6.6e-37 157.5 124 71.0
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 1.1e-36 156.8 134 67.2
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 6.2e-35 151.0 127 66.1
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 6.8e-34 147.5 139 61.2
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 1.2e-33 146.7 131 61.8
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 1.2e-33 146.7 139 61.2
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 1.3e-32 143.3 133 60.2
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 2.9e-32 142.1 136 60.3
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 2.4e-31 139.0 121 66.9
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 1.2e-30 136.7 121 64.5
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 1.7e-29 132.9 142 54.9
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 6.6e-29 131.0 139 59.0
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 3.8e-24 115.2 120 62.5
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 3.8e-24 115.2 120 62.5
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 3.5e-22 108.6 124 52.4
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 4.3e-20 101.7 132 51.5
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 5.6e-20 101.3 132 50.8
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 3.1e-18 95.5 131 46.6
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 4.0e-18 95.1 133 45.1
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 1.2e-17 93.6 123 52.8
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 2.6e-17 92.4 121 45.5
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 7.6e-17 90.9 129 46.5
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.3e-16 90.1 157 42.7
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 2.2e-16 89.4 128 46.1
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 6.4e-16 87.8 120 50.8
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 1.1e-15 87.0 126 45.2
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 1.4e-15 86.7 108 50.0
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 2.4e-15 85.9 126 46.0
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 2.4e-15 85.9 131 45.0
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 3.2e-15 85.5 121 49.6
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 7.1e-15 84.3 121 47.9
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 7.1e-15 84.3 121 47.9
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 7.1e-15 84.3 134 44.8
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 7.1e-15 84.3 135 43.0
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 9.3e-15 84.0 126 47.6
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 9.3e-15 84.0 120 46.7
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 1.2e-14 83.6 126 40.5
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 2.7e-14 82.4 124 46.0
arahy.Tifrunner.gnm1.ann1.KD7YUX Arachis hypogaea HOM05D007735 ORTHO05D009638 3.5e-14 82.0 130 50.8
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 7.9e-14 80.9 131 42.7
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 7.9e-14 80.9 134 39.6
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 1.0e-13 80.5 134 42.5
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 1.7e-13 79.7 127 41.7
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 2.3e-13 79.3 128 42.2
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 3.0e-13 79.0 119 47.1
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 3.9e-13 78.6 119 46.2
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 3.9e-13 78.6 136 40.4
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 3.9e-13 78.6 127 44.1
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 6.6e-13 77.8 116 49.1
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 8.7e-13 77.4 119 46.2
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.5e-12 76.6 116 45.7
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.9e-12 76.3 111 44.1
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 1.6e-11 73.2 120 45.0
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 2.1e-11 72.8 139 37.4
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 2.8e-11 72.4 130 41.5
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 1.1e-10 70.5 125 44.0
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 3.1e-10 68.9 126 44.4
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 9.0e-10 67.4 129 37.2
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 1.2e-09 67.0 126 44.4
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.5e-09 66.6 130 36.2
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 2.6e-09 65.9 127 35.4
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 2.6e-09 65.9 129 38.0
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 3.4e-09 65.5 122 39.3
PGSC0003DMG400015147 Solanum tuberosum HOM05D007735 ORTHO05D009638 4.5e-09 65.1 110 40.0
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 7.6e-09 64.3 122 36.9
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 2.9e-08 62.4 128 35.2
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 2.9e-08 62.4 128 35.2
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 1.1e-07 60.5 105 38.1
Cpa.g.sc6.350 Carica papaya HOM05D007735 ORTHO05D009638 5.5e-07 58.2 112 42.0
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 7.1e-07 57.8 118 38.1
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 7.1e-07 57.8 115 37.4
ATR0605G038 Amborella trichopoda HOM05D007735 ORTHO05D009638 2.7e-06 55.8 104 41.3
Nitab4.5_0004507g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 4.6e-06 55.1 125 35.2


User provided reference genes

Program Settings