Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 2.3e-69 265.4 130 100.0
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.7e-43 179.5 152 63.2
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.7e-43 179.5 152 63.2
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.9e-42 176.0 152 61.8
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 3.2e-42 175.3 152 61.8
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 3.2e-42 175.3 152 60.5
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.9e-39 166.0 152 59.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.1e-38 162.5 152 57.2
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.7e-38 161.4 152 58.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 4.0e-37 158.3 152 56.6
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 4.0e-37 158.3 152 56.6
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 5.8e-36 154.5 152 55.3
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.2e-33 146.7 152 52.6
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.1e-33 146.0 152 53.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 4.6e-33 144.8 152 52.6
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 6.0e-33 144.4 152 52.0
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.0e-32 143.7 152 52.6
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.0e-32 143.7 79 82.3
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.3e-32 143.3 152 50.0
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-32 143.3 152 51.3
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.3e-32 143.3 152 51.3
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 3.0e-32 142.1 152 53.3
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 3.0e-32 142.1 152 53.3
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.1e-32 141.4 152 50.7
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.1e-32 141.4 152 53.9
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.1e-32 141.4 152 50.0
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 6.6e-32 141.0 152 49.3
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 8.6e-32 140.6 152 50.7
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 8.6e-32 140.6 152 49.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.5e-31 139.8 152 48.7
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 3.3e-31 138.7 153 50.3
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 3.3e-31 138.7 152 51.3
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 4.3e-31 138.3 152 51.3
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 2.8e-30 135.6 152 49.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 4.7e-30 134.8 152 48.0
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 4.7e-30 134.8 152 48.7
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 6.2e-30 134.4 152 48.0
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 8.1e-30 134.0 146 48.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.1e-29 133.7 152 49.3
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.3e-29 132.5 152 48.7
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 3.1e-29 132.1 152 49.3
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.1e-29 132.1 152 48.7
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.1e-29 132.1 152 48.0
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 4.0e-29 131.7 152 47.4
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 5.2e-29 131.3 151 49.0
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 6.8e-29 131.0 152 48.7
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 8.9e-29 130.6 152 46.1
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 8.9e-29 130.6 152 46.1
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.2e-28 130.2 152 46.1
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.2e-28 130.2 152 46.1
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.5e-28 129.8 152 48.7
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 2.0e-28 129.4 152 46.1
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 2.0e-28 129.4 152 46.1
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 3.4e-28 128.6 152 47.4
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.4e-28 128.3 152 46.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 4.4e-28 128.3 144 48.6
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 4.4e-28 128.3 152 46.1
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 5.8e-28 127.9 152 46.1
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 7.5e-28 127.5 152 46.7
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 9.9e-28 127.1 144 47.9
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 1.3e-27 126.7 152 48.7
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.3e-27 126.7 152 46.1
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 1.7e-27 126.3 152 46.7
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.7e-27 126.3 152 44.1
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 6.4e-27 124.4 152 44.7
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 6.4e-27 124.4 152 44.1
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 8.3e-27 124.0 152 46.7
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-26 123.6 152 44.7
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.1e-26 123.6 152 46.7
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-26 123.2 152 44.7
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-26 123.2 152 44.7
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.4e-26 123.2 152 44.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.4e-26 123.2 152 45.4
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.9e-26 122.9 152 44.1
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 2.4e-26 122.5 152 45.4
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.4e-26 122.5 152 44.7
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.4e-26 122.5 152 46.7
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.2e-26 122.1 119 52.9
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 5.4e-26 121.3 152 46.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 7.1e-26 120.9 152 43.4
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 7.1e-26 120.9 152 44.1
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 7.1e-26 120.9 152 47.4
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 7.1e-26 120.9 152 46.1
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 9.2e-26 120.6 152 46.7
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.2e-25 120.2 152 44.1
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.1e-25 119.4 152 44.7
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 2.1e-25 119.4 152 44.7
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.7e-25 119.0 152 44.1
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 2.7e-25 119.0 152 42.8
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 4.6e-25 118.2 152 44.1
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 6.0e-25 117.9 152 42.1
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 6.0e-25 117.9 152 42.8
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 7.8e-25 117.5 152 44.1
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.0e-24 117.1 152 42.8
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.0e-24 117.1 152 44.7
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.7e-24 116.3 152 42.1
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.7e-24 116.3 151 43.7
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.7e-24 116.3 151 43.0
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 3.9e-24 115.2 152 42.8
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.9e-24 115.2 152 42.8
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 3.9e-24 115.2 152 42.1
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 6.6e-24 114.4 152 44.1
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 6.6e-24 114.4 152 43.4
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.1e-23 113.6 151 43.0
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-23 113.2 137 49.6
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 1.5e-23 113.2 152 43.4
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.3e-23 112.1 152 41.4
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 4.3e-23 111.7 153 42.5
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 4.3e-23 111.7 153 42.5
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 4.3e-23 111.7 152 40.8
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 7.3e-23 110.9 152 41.4
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 7.3e-23 110.9 152 42.1
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 9.5e-23 110.5 152 42.1
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.6e-22 109.8 128 46.9
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 2.1e-22 109.4 132 50.0
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 2.1e-22 109.4 155 43.2
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.1e-21 107.1 152 42.8
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.4e-21 106.7 152 41.4
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.8e-21 106.3 156 39.1
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.8e-21 106.3 151 38.4
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 3.1e-21 105.5 148 41.9
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 6.8e-21 104.4 145 41.4
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 5.8e-20 101.3 140 42.1
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 9.9e-20 100.5 154 38.3
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 9.9e-20 100.5 76 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.3e-19 100.1 154 37.7
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.7e-19 99.8 147 40.1
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 4.9e-19 98.2 132 46.2
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 3.2e-18 95.5 80 53.8
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 5.4e-18 94.7 143 35.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.2e-17 93.6 137 43.1
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.5e-17 92.0 151 36.4
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 7.8e-17 90.9 121 44.6
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.7e-16 89.7 78 50.0
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 3.0e-16 89.0 78 55.1
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 3.0e-16 89.0 78 55.1
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 3.3e-15 85.5 151 33.1
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.3e-15 85.1 129 44.2
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.6e-14 83.2 78 52.6
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.6e-14 82.0 47 78.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 3.2e-10 68.9 60 50.0
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.6e-09 66.6 75 45.3
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 6.0e-09 64.7 165 27.9


User provided reference genes

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