Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 9.0e-185 650.2 350 100.0
Psat4g111200 Pisum sativum HOM05D003079 ORTHO05D003461 8.5e-50 201.8 301 48.8
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 4.1e-44 183.0 273 44.3
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 9.1e-44 181.8 296 42.2
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 6.5e-42 175.6 272 42.3
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 5.5e-41 172.6 301 41.2
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.0e-39 168.3 271 43.2
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 6.7e-39 165.6 366 36.1
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 4.4e-38 162.9 300 38.0
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 4.1e-36 156.4 295 38.3
TPR.G28965 Trifolium pratense HOM05D003079 ORTHO05D003461 5.3e-36 156.0 227 51.5
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.2e-35 154.8 365 36.2
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.2e-33 146.7 263 38.8
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 1.2e-32 144.8 268 41.0
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.6e-32 143.3 264 37.9
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 4.7e-32 142.9 267 38.2
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 5.7e-30 136.0 367 32.4
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 5.7e-30 136.0 271 36.9
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 7.5e-30 135.6 351 32.5
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 3.7e-29 133.3 371 32.6
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 1.4e-28 131.3 265 38.5
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 2.0e-27 127.5 377 33.4
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 5.9e-27 125.9 366 31.1
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.0e-26 125.2 361 32.1
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.3e-26 124.8 367 31.9
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.3e-26 124.8 370 32.2
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.9e-25 120.9 369 30.9
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.5e-25 120.6 342 32.2
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 1.2e-24 118.2 369 31.2
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.7e-24 116.3 287 30.7
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.4e-23 114.8 257 35.8
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 1.4e-23 114.8 354 32.2
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 1.8e-23 114.4 365 32.1
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.8e-23 114.4 365 32.1
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 2.3e-23 114.0 270 34.1
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 3.0e-23 113.6 266 35.7
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 5.2e-23 112.8 368 31.5
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 6.8e-23 112.5 252 36.1
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.5e-22 111.3 339 31.9
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 5.7e-22 109.4 256 35.5
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 3.7e-21 106.7 281 29.9
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.3e-21 105.9 280 29.3
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 8.3e-21 105.5 270 31.1
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 1.4e-20 104.8 270 31.9
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 2.4e-20 104.0 274 30.7
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 5.4e-20 102.8 269 34.2
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.4e-20 102.8 281 28.5
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 1.2e-19 101.7 362 30.1
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.2e-19 101.7 357 31.9
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 3.5e-19 100.1 260 30.8
Lalb_Chr18g0048661 Lupinus albus HOM05D003079 ORTHO05D003461 3.5e-19 100.1 191 41.4
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 7.7e-19 99.0 352 31.0
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 7.7e-19 99.0 267 32.2
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.3e-18 98.2 353 31.7
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 1.7e-18 97.8 337 27.6
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.7e-18 97.8 353 31.7
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 2.3e-18 97.4 250 30.8
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 2.3e-18 97.4 260 28.1
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 3.8e-18 96.7 294 30.3
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 3.8e-18 96.7 350 28.6
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 6.6e-18 95.9 380 27.6
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 8.6e-18 95.5 215 36.3
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 2.5e-17 94.0 270 32.2
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 3.3e-17 93.6 263 28.5
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.2e-17 93.2 284 26.8
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 5.5e-17 92.8 269 28.6
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 5.5e-17 92.8 297 32.0
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 7.2e-17 92.4 373 27.6
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 2.1e-16 90.9 356 27.8
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 3.6e-16 90.1 369 29.0
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 3.6e-16 90.1 369 29.0
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 6.1e-16 89.4 254 32.3
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 8.0e-16 89.0 297 29.6
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.0e-15 88.6 372 26.9
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.8e-15 87.8 288 26.4
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 2.3e-15 87.4 369 28.7
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 5.2e-15 86.3 383 27.7
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 1.2e-14 85.1 270 30.0
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 1.5e-14 84.7 284 32.0
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 2.6e-14 84.0 244 32.8
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 2.6e-14 84.0 268 28.7
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.6e-14 84.0 268 28.7
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 3.4e-14 83.6 327 27.8
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 4.4e-14 83.2 367 28.9
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 9.8e-14 82.0 274 27.7
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.3e-13 81.6 258 27.9
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.3e-13 81.6 383 25.8
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 2.2e-13 80.9 354 28.5
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 2.8e-13 80.5 368 28.5
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 3.7e-13 80.1 156 34.6
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 4.9e-13 79.7 276 29.3
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 6.3e-13 79.3 263 29.7
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 1.1e-12 78.6 131 35.9
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.1e-12 78.6 252 31.0
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 5.4e-12 76.3 255 29.4
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 5.4e-12 76.3 235 30.6
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.2e-11 75.1 260 27.3
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.6e-11 74.7 240 28.8
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 2.0e-11 74.3 367 27.2
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 5.9e-11 72.8 318 25.8
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 5.9e-11 72.8 318 25.8
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 5.9e-11 72.8 257 26.8
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.3e-10 71.6 255 27.1
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.7e-10 71.2 259 27.4
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.5e-09 68.2 332 24.4
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.5e-09 68.2 288 25.0
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 1.5e-09 68.2 258 28.3
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.9e-09 67.8 260 25.8
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 4.3e-09 66.6 255 25.9
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 5.6e-09 66.2 332 24.4
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 7.3e-09 65.9 351 27.6
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 9.5e-09 65.5 255 25.9
Oeu006261.2 Olea europaea HOM05D003079 ORTHO05D003461 1.6e-08 64.7 158 31.0
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 2.8e-08 63.9 355 23.9
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 3.6e-08 63.5 344 25.6
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 3.6e-08 63.5 333 23.1
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.7e-08 63.2 295 24.4
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 6.1e-08 62.8 330 26.1
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 6.1e-08 62.8 278 25.9
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 6.1e-08 62.8 278 25.9
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 1.0e-07 62.0 333 26.4
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.4e-07 61.6 196 27.6
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 1.8e-07 61.2 333 22.8
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.8e-07 61.2 260 26.2
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 3.1e-07 60.5 280 24.6
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 4.0e-07 60.1 352 26.1
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 5.2e-07 59.7 357 24.1
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 6.8e-07 59.3 366 26.2
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 8.9e-07 58.9 292 25.3
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 8.9e-07 58.9 297 24.9
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.5e-06 58.2 255 27.1
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 1.5e-06 58.2 269 25.3
Ah.06g180930 Amaranthus hybridus HOM05D003079 ORTHO05D003461 2.0e-06 57.8 317 28.1
PSO541G1526 Papaver somniferum HOM05D003079 ORTHO05D003461 2.6e-06 57.4 276 27.9
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.4e-06 56.6 247 27.5
Os09g0481300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 5.8e-06 56.2 291 23.4
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 7.5e-06 55.8 250 24.4
Ca_00014_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 9.8e-06 55.5 128 31.2


User provided reference genes

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