Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 2.3e-277 958.4 513 100.0
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 4.9e-248 860.9 544 85.5
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.1e-242 843.2 513 88.1
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 5.3e-234 814.3 521 85.0
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.5e-217 759.6 514 81.7
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 1.6e-214 749.6 503 82.5
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 7.0e-210 734.2 505 80.6
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.2e-208 729.2 508 79.3
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.9e-207 726.1 406 93.8
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 3.2e-207 725.3 525 75.0
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 4.7e-206 721.5 464 81.2
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 4.7e-206 721.5 464 82.8
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.4e-205 719.9 458 83.0
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.0e-204 716.1 457 84.5
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 3.3e-204 715.3 457 81.6
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 9.7e-204 713.8 449 82.9
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.0e-200 703.7 459 80.2
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 5.0e-200 701.4 459 80.4
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.1e-199 700.3 450 81.6
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.5e-199 699.9 467 78.2
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 9.4e-199 697.2 505 77.2
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.2e-198 696.8 502 74.3
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 1.2e-198 696.8 457 79.9
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.2e-198 696.8 463 81.2
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 3.6e-198 695.3 458 79.3
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 3.6e-198 695.3 455 81.5
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 8.0e-198 694.1 458 79.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 8.0e-198 694.1 458 79.3
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.4e-197 693.3 463 80.8
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.4e-197 693.3 458 79.3
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.4e-197 693.3 474 78.1
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.0e-197 692.2 463 80.6
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 5.2e-197 691.4 525 72.4
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 5.2e-197 691.4 468 78.2
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.8e-197 691.0 463 80.3
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 6.8e-197 691.0 524 72.3
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.6e-196 689.1 464 80.4
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 3.4e-196 688.7 443 81.9
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 3.4e-196 688.7 520 73.3
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 5.7e-196 688.0 507 74.0
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.7e-195 686.4 460 78.9
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 3.7e-195 685.3 460 78.7
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.1e-194 683.7 457 79.0
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.4e-194 682.6 461 78.7
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 7.0e-194 681.0 463 76.9
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 9.1e-194 680.6 457 77.7
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 9.1e-194 680.6 460 78.5
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 9.1e-194 680.6 497 73.2
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.7e-193 679.1 473 76.1
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 2.7e-193 679.1 497 73.2
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 3.5e-193 678.7 520 72.1
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 3.5e-193 678.7 518 73.2
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 5.9e-193 677.9 536 70.5
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 7.7e-193 677.6 519 72.6
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.3e-192 676.8 462 75.8
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.3e-192 676.8 456 78.7
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 2.2e-192 676.0 456 78.7
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 2.2e-192 676.0 510 72.4
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 2.9e-192 675.6 520 71.3
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.9e-192 675.6 518 72.8
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 5.0e-192 674.9 519 71.7
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.1e-191 673.7 512 72.1
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 1.9e-191 672.9 438 80.8
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.5e-191 672.5 447 79.4
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.2e-191 671.8 464 77.2
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 1.2e-190 670.2 435 80.5
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.6e-190 669.8 516 71.5
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 2.1e-190 669.5 475 74.7
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 2.7e-190 669.1 448 78.3
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.0e-189 667.2 487 73.3
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 5.2e-189 664.8 465 74.6
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.5e-188 663.3 431 80.3
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 4.4e-188 661.8 444 77.0
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 5.7e-188 661.4 472 74.4
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 7.5e-188 661.0 456 77.4
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 7.5e-188 661.0 456 78.7
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.7e-187 659.8 458 77.3
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.8e-187 659.1 445 80.4
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 4.9e-187 658.3 456 75.4
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 4.9e-187 658.3 460 76.5
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 8.3e-187 657.5 467 74.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.4e-186 656.8 443 77.4
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.4e-186 656.8 443 77.4
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.2e-185 653.7 445 78.0
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 1.2e-185 653.7 439 78.6
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 2.7e-185 652.5 496 72.2
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 4.5e-185 651.7 471 72.2
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.3e-184 650.2 456 78.5
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 2.3e-184 649.4 441 76.9
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.1e-183 647.1 511 69.9
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.5e-183 646.7 463 74.3
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.2e-183 645.2 498 70.3
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 4.2e-183 645.2 413 81.1
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.6e-182 643.3 447 76.7
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.0e-181 640.6 405 82.5
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.0e-181 640.6 440 77.3
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 7.5e-180 634.4 432 76.6
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 9.8e-180 634.0 456 73.9
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.9e-179 631.7 460 73.7
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.4e-178 630.2 404 80.9
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 4.1e-178 628.6 491 70.7
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 5.4e-178 628.2 465 72.0
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.0e-177 626.3 451 73.2
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 7.3e-175 617.8 445 73.0
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 2.8e-174 615.9 443 74.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 1.7e-171 606.7 432 72.2
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.4e-170 603.6 455 70.8
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 1.0e-168 597.4 508 66.5
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.3e-168 596.3 447 71.6
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 3.7e-163 578.9 443 69.1
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.1e-161 573.2 421 74.1
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 2.7e-161 572.8 489 64.2
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 2.3e-160 569.7 509 63.9
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 5.4e-154 548.5 455 65.3
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 5.4e-154 548.5 455 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.8e-141 506.9 446 59.4
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 5.1e-136 488.8 455 58.7
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.5e-135 487.3 431 59.2
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.8e-128 463.8 376 69.4
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 5.3e-125 452.2 350 69.1
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 2.1e-121 440.3 373 63.8
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 4.6e-121 439.1 367 63.2
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 1.4e-101 374.4 230 85.2
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 9.4e-98 361.7 412 49.3
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.0e-95 354.0 449 49.7
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 8.8e-88 328.6 280 62.9
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.5e-84 316.2 311 59.8
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 5.0e-75 286.2 242 71.5
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.6e-73 281.2 441 39.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 8.8e-72 275.4 384 40.1
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 4.5e-68 263.1 156 90.4
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.8e-64 251.1 233 60.1
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 6.4e-62 242.7 285 53.0
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 8.3e-62 242.3 496 31.7
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 3.3e-58 230.3 376 38.0
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 5.4e-53 213.0 452 36.3
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 2.7e-52 210.7 156 68.6
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 7.6e-39 166.0 143 66.4
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.1e-37 162.2 126 62.7
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.4e-32 144.4 132 61.4
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.1e-28 131.3 100 69.0
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.3e-27 128.6 83 77.1
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 3.3e-26 124.0 98 73.5
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 5.4e-21 106.7 96 60.4
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 2.3e-19 101.3 386 24.9
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 6.7e-11 73.2 422 23.5
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.3e-10 70.5 67 62.7
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 4.3e-10 70.5 221 27.6


User provided reference genes

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