Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 4.8e-57 224.2 105 100.0
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 1.3e-30 136.3 106 62.3
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 2.9e-30 135.2 104 68.3
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 1.2e-23 113.2 99 62.6
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.2e-23 113.2 99 62.6
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.0e-22 110.2 109 56.0
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 2.2e-22 109.0 109 53.2
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 2.5e-21 105.5 112 56.2
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 6.3e-17 90.9 112 47.3
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.1e-16 90.1 111 45.0
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 2.4e-16 89.0 112 42.9
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 7.0e-16 87.4 123 41.5
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 4.5e-15 84.7 112 44.6
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 7.7e-15 84.0 114 43.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.1e-13 80.1 113 42.5
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.5e-13 79.0 122 42.6
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 4.7e-12 74.7 108 38.9
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 4.7e-12 74.7 112 40.2
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.3e-11 72.4 108 41.7
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 3.0e-11 72.0 104 43.3
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 4.0e-11 71.6 104 39.4
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 1.5e-10 69.7 112 40.2
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.7e-10 67.8 109 38.5
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.7e-10 67.8 109 38.5
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 7.5e-10 67.4 114 39.5
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.3e-09 66.6 115 35.7
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.3e-09 66.6 105 41.0
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 2.2e-09 65.9 108 38.9
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 2.2e-09 65.9 106 39.6
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 3.7e-09 65.1 114 36.8
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 4.9e-09 64.7 106 38.7
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 6.3e-09 64.3 106 38.7
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 8.3e-09 63.9 105 40.0
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 1.4e-08 63.2 111 36.9
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 1.8e-08 62.8 74 50.0
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 3.1e-08 62.0 116 35.3
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 3.1e-08 62.0 105 37.1
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 4.1e-08 61.6 110 35.5
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 5.4e-08 61.2 108 37.0
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 5.4e-08 61.2 114 34.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 7.0e-08 60.8 105 39.0
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 9.2e-08 60.5 109 35.8
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.6e-07 59.7 97 41.2
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 2.0e-07 59.3 109 37.6
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 7.7e-07 57.4 111 36.0
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 7.7e-07 57.4 114 33.3
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 1.0e-06 57.0 103 41.7
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 1.0e-06 57.0 103 41.7
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.0e-06 57.0 108 36.1
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.0e-06 57.0 127 36.2
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 1.7e-06 56.2 123 34.1
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.7e-06 56.2 100 38.0
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.3e-06 55.8 113 35.4
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 2.3e-06 55.8 123 31.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.9e-06 55.5 129 35.7
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 5.0e-06 54.7 129 35.7
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 6.6e-06 54.3 126 32.5
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 8.6e-06 53.9 103 36.9


User provided reference genes

Program Settings