Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 4.0e-257 891.0 462 100.0
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.1e-206 723.4 466 80.5
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 5.1e-204 714.5 466 79.8
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.6e-192 675.6 453 77.7
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 5.3e-185 651.4 455 75.6
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 5.9e-184 647.9 462 73.2
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 2.4e-177 625.9 376 87.8
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.0e-176 622.9 425 76.9
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 3.7e-170 602.1 385 80.8
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.8e-164 583.2 466 67.6
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 2.0e-163 579.7 462 68.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.7e-160 569.3 457 65.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 3.6e-157 558.9 465 64.1
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 4.4e-155 552.0 473 61.5
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.2e-152 543.9 470 61.1
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 4.6e-152 542.0 465 63.7
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 4.3e-150 535.4 461 61.4
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.1e-149 533.1 480 61.0
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 6.2e-149 531.6 463 60.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 6.2e-149 531.6 472 60.8
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 8.9e-148 527.7 460 60.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.4e-147 525.8 367 76.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.9e-146 521.9 472 60.4
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 4.9e-146 521.9 461 61.4
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 7.1e-145 518.1 290 92.1
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.6e-144 516.9 463 58.5
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.9e-143 512.3 459 58.2
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.1e-142 510.8 469 60.3
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.6e-142 508.4 466 59.2
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 7.3e-142 508.1 459 57.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.3e-142 508.1 457 58.0
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.1e-141 506.5 463 60.0
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 3.6e-141 505.8 452 60.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 3.6e-141 505.8 466 60.9
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 6.2e-141 505.0 464 58.6
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 6.8e-140 501.5 463 58.1
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 5.8e-139 498.4 467 57.0
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.2e-138 496.5 470 58.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.2e-138 496.5 461 57.5
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.9e-137 493.4 461 58.4
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.9e-137 493.4 465 56.6
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.6e-136 488.8 478 55.4
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.0e-135 487.6 461 55.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 6.6e-135 485.0 683 44.8
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.1e-134 484.2 462 57.1
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 3.3e-134 482.6 434 60.4
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 4.3e-134 482.3 465 55.3
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 5.6e-134 481.9 467 57.2
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 5.6e-134 481.9 468 55.8
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.8e-133 479.6 469 57.4
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.6e-133 479.2 469 57.4
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.6e-133 479.2 465 55.7
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.4e-132 477.2 468 55.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 2.6e-131 473.0 460 55.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 3.4e-131 472.6 464 54.5
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.7e-130 470.3 462 54.5
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.7e-130 470.3 460 55.2
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.9e-130 469.5 462 55.4
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.9e-130 469.5 462 55.4
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 8.4e-130 468.0 462 55.4
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 8.4e-130 468.0 462 54.3
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.4e-129 466.5 462 54.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.2e-129 466.1 409 61.1
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 4.2e-129 465.7 463 54.9
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 4.2e-129 465.7 459 56.6
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.6e-128 463.8 462 54.5
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.1e-128 463.4 460 55.4
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.3e-127 460.7 463 54.6
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.1e-126 457.6 467 52.5
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.3e-125 454.1 457 55.4
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.9e-121 440.3 470 52.8
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.4e-121 438.7 562 46.6
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.1e-120 436.8 374 61.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.0e-119 434.5 499 50.7
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.5e-118 429.9 402 58.0
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 9.6e-118 427.9 432 55.3
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.4e-115 419.5 535 47.9
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 7.6e-115 418.3 228 95.2
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-114 417.5 463 50.3
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.7e-114 417.2 460 50.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 8.4e-114 414.8 459 52.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 3.7e-109 399.4 381 58.8
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 6.2e-109 398.7 435 51.5
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 3.4e-107 392.9 432 51.9
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 3.4e-107 392.9 392 53.6
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.2e-106 390.2 459 48.8
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 4.9e-106 389.0 321 62.0
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 4.6e-104 382.5 366 56.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.3e-103 380.9 470 47.2
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.0e-103 379.8 419 51.1
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 2.5e-102 376.7 285 68.1
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.4e-100 370.2 426 50.9
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.5e-99 367.5 505 48.5
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.9e-97 360.5 373 53.6
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.2e-97 359.8 461 47.1
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.1e-96 355.5 291 61.9
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.1e-94 351.3 482 44.0
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 5.7e-94 349.0 491 43.2
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.2e-93 347.1 352 55.4
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.5e-89 333.6 410 48.3
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 4.2e-89 332.8 481 44.3
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.8e-84 317.4 254 63.0
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-82 311.6 329 52.6
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.8e-82 309.7 264 61.0
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.0e-79 301.6 294 56.8
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 3.9e-79 299.7 346 49.1
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 6.3e-77 292.4 468 40.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.3e-71 273.9 376 45.2
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.4e-68 264.6 523 35.6
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.1e-65 255.0 446 37.2
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.2e-65 253.1 311 49.2
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 4.7e-64 249.6 242 53.7
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 3.0e-63 246.9 146 88.4
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.5e-59 233.0 297 46.1
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.7e-56 223.0 167 67.7
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.5e-49 201.4 296 40.9
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.4e-47 194.9 446 35.2
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.4e-44 184.9 121 82.6
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.0e-42 177.2 159 58.5
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.2e-39 166.4 106 72.6
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 8.9e-39 165.6 210 48.6
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 6.0e-35 152.9 564 28.5
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.3e-34 151.0 165 51.5
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 6.8e-31 139.4 552 27.2
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.7e-29 133.7 127 63.0
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-23 115.5 161 43.5
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.4e-23 115.2 378 29.1
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 5.2e-23 113.2 81 76.5
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.8e-23 112.8 170 38.8
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.8e-21 107.1 124 51.6
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 5.6e-17 93.2 84 58.3
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.8e-15 88.2 125 38.4
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.1e-15 87.4 75 56.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.1e-15 87.4 75 56.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.9e-15 86.3 75 54.7
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 4.4e-14 83.6 46 89.1
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.8e-14 83.2 75 54.7
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.4e-13 79.7 64 68.8
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 8.4e-13 79.3 54 72.2
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.7e-10 71.6 172 32.0
Psat0ss26165g0120 Pisum sativum HOM05D004949 ORTHO05D006006 1.6e-08 65.1 44 77.3
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 2.1e-08 64.7 86 43.0
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.6e-06 56.2 47 51.1


User provided reference genes

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