Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g066660 Medicago truncatula HOM05D001206 ORTHO05D025843 2.6e-64 248.4 117 100.0
Medtr0130s0050 Medicago truncatula HOM05D030283 ORTHO05D025843 7.1e-09 64.3 43 62.8
Medtr2g010180 Medicago truncatula HOM05D001206 ORTHO05D002068 1.6e-08 63.2 35 80.0
arahy.Tifrunner.gnm1.ann1.3DT0RH Arachis hypogaea HOM05D001206 ORTHO05D002068 6.0e-08 61.2 48 62.5
arahy.Tifrunner.gnm1.ann1.02U3XB Arachis hypogaea HOM05D001206 ORTHO05D002068 7.8e-08 60.8 48 60.4
Haze_10389 Corylus avellana HOM05D001206 ORTHO05D002068 7.8e-08 60.8 30 86.7
TPR.G32630 Trifolium pratense HOM05D001206 ORTHO05D002068 1.7e-07 59.7 35 74.3
Ca_00185_v3 Cicer arietinum L. HOM05D001206 ORTHO05D002068 2.3e-07 59.3 48 60.4
MD05G1050200 Malus domestica HOM05D001206 ORTHO05D002068 2.3e-07 59.3 48 60.4
VMungo0540G1701 Vigna mungo HOM05D001206 ORTHO05D002068 2.3e-07 59.3 48 58.3
QL11p026734 Quercus lobata HOM05D001206 ORTHO05D002068 3.0e-07 58.9 30 83.3
vmacro01903 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 3.0e-07 58.9 56 50.0
Gohir.A12G017600 Gossypium hirsutum HOM05D001206 ORTHO05D002068 3.9e-07 58.5 27 92.6
Lalb_Chr20g0122751 Lupinus albus HOM05D001206 ORTHO05D002068 3.9e-07 58.5 27 92.6
Hma1.2p1_0908F.1_g235710 Hydrangea macrophylla HOM05D001206 ORTHO05D002068 5.1e-07 58.2 27 92.6
Lsat_1_v5_gn_7_83060 Lactuca sativa HOM05D001206 ORTHO05D002068 5.1e-07 58.2 35 71.4
RcHm_v2.0_Chr6g0269381 Rosa chinensis HOM05D001206 ORTHO05D002068 5.1e-07 58.2 35 74.3
Sabra16G0178300 Salix brachista HOM05D001206 ORTHO05D002068 5.1e-07 58.2 27 88.9
Glyma.15G060700 Glycine max HOM05D001206 ORTHO05D002068 6.6e-07 57.8 48 58.3
Psat1g212600 Pisum sativum HOM05D001206 ORTHO05D002068 6.6e-07 57.8 27 88.9
Prupe.8G076300 Prunus persica HOM05D001206 ORTHO05D002068 6.6e-07 57.8 27 88.9
THA.LOC104799673 Tarenaya hassleriana HOM05D001206 ORTHO05D002068 6.6e-07 57.8 27 88.9
TAR628G1628 Trochodendron aralioides HOM05D001206 ORTHO05D002068 6.6e-07 57.8 35 71.4
FvH4_2g11120 Fragaria vesca HOM05D001206 ORTHO05D002068 8.6e-07 57.4 40 67.5
FAN15G0254 Fragaria x ananassa HOM05D001206 ORTHO05D002068 8.6e-07 57.4 40 67.5
FAN24G1517 Fragaria x ananassa HOM05D001206 ORTHO05D002068 8.6e-07 57.4 40 67.5
FAN27G1668 Fragaria x ananassa HOM05D001206 ORTHO05D002068 8.6e-07 57.4 40 67.5
Lj6g0027071 Lotus japonicus HOM05D001206 ORTHO05D002068 1.1e-06 57.0 35 71.4
Phvul.006G199100 Phaseolus vulgaris HOM05D001206 ORTHO05D002068 1.1e-06 57.0 48 56.2
TWI14G1249 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 1.1e-06 57.0 48 58.3
CSS0023121 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 1.5e-06 56.6 33 69.7
Eucgr.I02568 Eucalyptus grandis HOM05D001206 ORTHO05D002068 1.5e-06 56.6 35 68.6
Eucgr.I02569 Eucalyptus grandis HOM05D001206 ORTHO05D002068 1.5e-06 56.6 35 68.6
Manes.10G094600 Manihot esculenta HOM05D001206 ORTHO05D002068 1.5e-06 56.6 35 68.6
Potri.001G285900 Populus trichocarpa HOM05D001206 ORTHO05D002068 1.5e-06 56.6 26 88.5
Cpa.g.sc20.48 Carica papaya HOM05D001206 ORTHO05D002068 1.9e-06 56.2 39 69.2
DCAR_029282 Daucus carota HOM05D001206 ORTHO05D002068 1.9e-06 56.2 26 88.5
Glyma.13G254200 Glycine max HOM05D001206 ORTHO05D002068 1.9e-06 56.2 48 56.2
Gohir.D12G018200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.9e-06 56.2 27 88.9
Gorai.008G018500 Gossypium raimondii HOM05D001206 ORTHO05D002068 1.9e-06 56.2 27 88.9
Aa31LG1G17460 Aethionema arabicum HOM05D001206 ORTHO05D002068 2.5e-06 55.8 27 85.2
EL10Ac9g22131 Beta vulgaris HOM05D001206 ORTHO05D002068 2.5e-06 55.8 27 85.2
AUR62027076 Chenopodium quinoa HOM05D001206 ORTHO05D002068 2.5e-06 55.8 27 85.2
MBI16_g44751_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D002068 2.5e-06 55.8 35 68.6
PGR142G3443 Punica granatum HOM05D001206 ORTHO05D002068 2.5e-06 55.8 27 85.2
CSS0000304 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 3.3e-06 55.5 27 81.5
AUR62030916 Chenopodium quinoa HOM05D001206 ORTHO05D002068 3.3e-06 55.5 30 76.7
Duzib248G0450 Durio zibethinus HOM05D001206 ORTHO05D002068 3.3e-06 55.5 35 68.6
Peaxi162Scf00299g00236 Petunia axillaris HOM05D001206 ORTHO05D002068 3.3e-06 55.5 48 56.2
CSS0046406 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 4.3e-06 55.1 35 65.7
CANSAT54G1477 Cannabis sativa HOM05D001206 ORTHO05D002068 4.3e-06 55.1 30 76.7
CARHR278410 Cardamine hirsuta HOM05D001206 ORTHO05D002068 4.3e-06 55.1 33 69.7
Dinv08963 Davidia involucrata HOM05D001206 ORTHO05D002068 4.3e-06 55.1 39 69.2
Lj5A225G70 Lonicera japonica HOM05D001206 ORTHO05D002068 4.3e-06 55.1 48 54.2
Ah.01g024200 Amaranthus hybridus HOM05D001206 ORTHO05D002068 5.6e-06 54.7 30 76.7
AL8G41810 Arabidopsis lyrata HOM05D001206 ORTHO05D002068 5.6e-06 54.7 33 69.7
AT5G64440 Arabidopsis thaliana HOM05D001206 ORTHO05D002068 5.6e-06 54.7 33 69.7
A06p31100 Brassica napus HOM05D001206 ORTHO05D002068 5.6e-06 54.7 27 85.2
BraA06t26053Z Brassica rapa HOM05D001206 ORTHO05D002068 5.6e-06 54.7 27 85.2
Carub.0008s2524 Capsella rubella HOM05D001206 ORTHO05D002068 5.6e-06 54.7 33 69.7
CiPaw.05G026300 Carya illinoinensis HOM05D001206 ORTHO05D002068 5.6e-06 54.7 35 65.7
CiPaw.05G026500 Carya illinoinensis HOM05D001206 ORTHO05D002068 5.6e-06 54.7 35 65.7
Nn1g05689 Nelumbo nucifera HOM05D001206 ORTHO05D002068 5.6e-06 54.7 27 81.5
PSO700G0067 Papaver somniferum HOM05D001206 ORTHO05D002068 5.6e-06 54.7 30 76.7
TWI23G1316 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 5.6e-06 54.7 35 68.6
BcaC01g02682 Brassica carinata HOM05D001206 ORTHO05D002068 7.3e-06 54.3 27 85.2
C03p61820 Brassica napus HOM05D001206 ORTHO05D002068 7.3e-06 54.3 27 85.2
BolC3t18443H Brassica oleracea HOM05D001206 ORTHO05D002068 7.3e-06 54.3 27 85.2
Eucgr.I02570 Eucalyptus grandis HOM05D001206 ORTHO05D002068 7.3e-06 54.3 35 65.7
Gohir.A13G049200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 7.3e-06 54.3 35 65.7
Gohir.D13G047700 Gossypium hirsutum HOM05D001206 ORTHO05D002068 7.3e-06 54.3 35 65.7
Gorai.013G053300 Gossypium raimondii HOM05D001206 ORTHO05D002068 7.3e-06 54.3 35 65.7
Sed0003330 Sechium edule HOM05D001206 ORTHO05D002068 7.3e-06 54.3 26 84.6
Ah.01g007260 Amaranthus hybridus HOM05D001206 ORTHO05D002068 9.5e-06 53.9 30 73.3
Peaxi162Scf00152g00738 Petunia axillaris HOM05D001206 ORTHO05D002068 9.5e-06 53.9 30 73.3


User provided reference genes

Program Settings