Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 0.0e+00 2443.3 1251 100.0
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 0.0e+00 1738.0 1172 78.4
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 0.0e+00 1576.2 1246 69.5
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 0.0e+00 1457.6 1296 62.7
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 0.0e+00 1370.5 1218 62.2
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 0.0e+00 1332.4 1214 61.1
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 0.0e+00 1328.9 1049 68.4
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 0.0e+00 1303.5 1307 56.3
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 0.0e+00 1269.2 1303 55.4
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 0.0e+00 1198.7 1260 54.1
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 2.6e-287 992.6 765 69.9
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 3.8e-209 733.0 1319 39.3
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 2.7e-207 726.9 1348 38.6
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 5.1e-206 722.6 1341 38.9
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 1.5e-194 684.5 1299 36.9
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 4.5e-194 682.9 461 78.7
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 1.6e-191 674.5 1310 36.6
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 1.0e-190 671.8 1305 36.2
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 3.9e-190 669.8 1315 37.8
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 8.8e-190 668.7 1276 36.5
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 7.2e-184 649.0 1307 37.0
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.8e-180 637.1 1247 37.2
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 2.4e-179 634.0 1339 34.7
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 1.1e-171 608.6 1355 34.3
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 1.3e-169 601.7 1442 33.8
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 5.3e-163 579.7 1230 35.1
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 1.1e-160 572.0 1273 33.9
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 4.7e-159 566.6 1264 33.5
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.4e-158 565.1 1317 34.0
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 2.8e-156 557.4 1282 33.7
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 1.1e-155 555.4 1230 34.1
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 5.9e-154 549.7 1356 33.0
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 1.3e-153 548.5 1316 33.8
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.6e-151 541.6 1347 32.7
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.8e-150 538.1 1379 32.3
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 4.0e-150 537.0 1451 31.2
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 6.8e-150 536.2 1256 32.2
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 1.2e-149 535.4 1330 33.0
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.2e-148 531.2 1345 32.8
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 3.1e-147 527.3 1390 30.5
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.3e-145 521.9 1235 33.6
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 2.9e-145 520.8 1339 31.1
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 3.3e-144 517.3 1294 31.5
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 2.1e-143 514.6 1299 32.1
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 6.1e-143 513.1 1478 29.3
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.8e-142 511.5 1336 31.5
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.3e-142 511.1 1397 31.1
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 4.0e-142 510.4 1267 32.0
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 5.2e-142 510.0 1387 31.3
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.2e-141 508.8 1393 30.9
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 5.8e-141 506.5 1297 32.4
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 1.1e-139 502.3 1264 31.7
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.4e-139 501.9 1251 32.5
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 5.0e-137 493.4 1314 31.4
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 6.6e-137 493.0 1293 32.1
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 8.6e-137 492.7 1330 31.4
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 9.5e-136 489.2 1346 31.2
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 5.2e-134 483.4 1302 30.7
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.2e-133 482.3 1341 30.8
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.2e-133 482.3 1341 30.8
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.2e-133 482.3 1289 30.6
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 2.2e-132 478.0 1367 30.7
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 3.7e-132 477.2 1275 31.1
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.9e-131 474.9 1213 31.7
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 2.4e-131 474.6 1343 30.2
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 3.2e-131 474.2 1303 31.2
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 6.0e-130 469.9 1233 31.2
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 9.5e-128 462.6 1355 29.7
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 1.1e-126 459.1 1258 31.1
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.2e-124 451.4 1276 29.5
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.4e-123 448.7 1207 32.0
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 9.2e-123 446.0 1279 29.8
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.6e-122 445.3 1253 30.2
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 1.7e-121 441.8 1331 30.2
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.1e-120 439.1 1235 30.1
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.1e-120 439.1 914 34.9
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 5.2e-118 430.3 1615 28.0
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 7.6e-117 426.4 1585 26.2
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 5.4e-115 420.2 1273 29.9
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 2.1e-114 418.3 1568 26.3
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 1.5e-112 412.1 1278 29.3
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.2e-109 402.5 1554 26.1
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.0e-105 389.4 1072 31.2
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 5.1e-105 387.1 929 32.9
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.6e-101 374.8 1257 29.5
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 5.6e-96 357.1 1497 26.3
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.1e-91 342.8 1272 26.5
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 5.5e-91 340.5 493 40.0
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.8e-87 328.2 1228 25.6
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.1e-86 326.2 1229 26.5
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 2.6e-85 321.6 1360 26.6
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 1.4e-83 315.8 1270 26.9
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 1.9e-83 315.5 842 32.8
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 9.3e-83 313.2 1070 28.5
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 7.9e-82 310.1 539 39.0
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.2e-75 288.1 942 27.9
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.2e-75 288.1 942 27.9
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 5.5e-75 287.3 284 51.1
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 2.0e-72 278.9 1232 25.2
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.2e-68 265.4 342 43.3
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 4.2e-67 261.2 263 49.8
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 7.4e-64 250.4 515 36.1
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 1.4e-57 229.6 1258 24.2
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.9e-57 228.0 307 45.6
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.7e-55 222.6 502 32.3
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.2e-52 212.2 384 37.8
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.5e-48 199.5 191 52.9
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.6e-48 198.7 191 53.4
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.1e-46 191.8 106 84.9
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 7.2e-43 180.6 461 27.3
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.1e-38 165.2 107 70.1
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 2.0e-37 162.5 109 67.0
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 7.7e-37 160.6 116 63.8
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.5e-35 155.6 212 42.5
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 8.3e-31 140.6 138 49.3
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 5.9e-29 134.4 1195 21.2
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 5.6e-27 127.9 133 46.6
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.0e-24 119.4 95 62.1
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.8e-24 117.9 146 43.2
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.1e-22 113.6 82 61.0
TPR.G36333 Trifolium pratense HOM05D004942 ORTHO05D005687 5.4e-22 111.3 64 84.4
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 1.2e-21 110.2 390 25.4
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 5.6e-19 101.3 81 60.5
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.3e-15 87.4 176 33.0
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 5.4e-14 84.7 99 48.5
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.4e-14 84.7 58 63.8
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.8e-13 80.9 69 52.2
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.7e-12 79.7 58 60.3
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.0e-12 79.0 59 57.6
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 4.7e-10 71.6 138 30.4
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 7.6e-08 64.3 69 44.9
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.9e-07 62.4 174 34.5
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 1.1e-06 60.5 127 32.3
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 3.2e-06 58.9 181 28.2


User provided reference genes

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