Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.5e-161 572.8 295 100.0
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.0e-149 533.5 296 93.6
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.4e-143 513.1 296 90.5
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 3.6e-142 508.4 295 90.2
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 4.1e-138 495.0 295 88.5
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.2e-131 472.6 298 83.2
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.2e-131 472.6 296 82.4
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.7e-129 465.7 305 81.3
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 9.4e-127 457.2 285 83.2
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.2e-126 456.8 288 82.3
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.1e-126 456.1 297 80.8
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.1e-122 443.7 291 77.3
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 4.1e-122 441.8 291 77.0
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.1e-119 433.7 288 76.4
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 2.8e-118 429.1 285 76.5
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.3e-117 426.0 274 78.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 3.0e-117 425.6 291 75.3
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 5.2e-117 424.9 291 74.9
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 8.9e-117 424.1 284 77.8
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.5e-116 423.3 276 76.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.6e-116 422.5 281 78.3
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.6e-116 422.5 272 77.6
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 2.2e-115 419.5 283 74.9
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 4.9e-115 418.3 289 75.4
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 8.3e-115 417.5 272 77.6
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.1e-114 417.2 244 82.4
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.2e-113 413.7 291 72.9
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.0e-113 412.9 265 78.5
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.0e-113 412.9 276 76.4
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 2.7e-113 412.5 244 82.0
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.5e-113 411.8 295 74.6
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 5.9e-113 411.4 290 71.4
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.0e-112 410.6 286 73.8
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 2.3e-112 409.5 240 85.0
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.3e-112 409.5 298 71.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 6.6e-112 407.9 293 72.4
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 5.6e-111 404.8 311 67.8
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 5.6e-111 404.8 296 72.3
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.6e-110 403.3 303 69.6
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.7e-110 401.7 294 71.4
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 8.0e-110 401.0 292 71.2
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 8.0e-110 401.0 290 71.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.0e-109 400.6 309 67.3
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.0e-109 400.6 305 69.2
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-109 400.2 293 71.7
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 5.2e-109 398.3 293 71.7
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.2e-109 398.3 268 74.6
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.5e-108 396.7 248 78.6
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 2.6e-108 396.0 288 72.2
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.6e-108 396.0 310 68.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.4e-108 395.2 263 75.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 4.4e-108 395.2 276 75.4
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 7.5e-108 394.4 288 72.2
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 7.5e-108 394.4 290 71.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.3e-107 393.7 290 70.0
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 1.7e-107 393.3 295 69.2
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.7e-107 393.3 267 74.5
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.2e-107 392.9 292 70.2
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 2.9e-107 392.5 297 69.4
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 4.9e-107 391.7 288 71.9
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 4.9e-107 391.7 292 69.2
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 8.3e-107 391.0 267 74.5
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 8.3e-107 391.0 300 69.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.4e-106 390.2 292 69.5
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.9e-106 389.8 305 68.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.4e-106 389.4 291 70.4
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.7e-105 386.0 269 70.6
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 4.6e-105 385.2 288 69.8
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.0e-104 384.0 276 71.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 2.3e-104 382.9 291 69.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.0e-104 382.5 223 83.0
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 5.0e-104 381.7 279 69.5
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.9e-103 379.8 295 67.1
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 3.3e-103 379.0 263 73.4
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.3e-103 378.6 259 73.0
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.4e-101 373.6 290 68.6
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.2e-100 370.5 285 69.1
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.5e-100 370.2 280 67.9
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.4e-98 362.8 223 81.2
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 9.2e-98 360.9 278 70.5
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 9.2e-98 360.9 257 71.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 1.2e-97 360.5 267 70.0
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 3.5e-97 359.0 262 70.6
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.6e-97 358.6 238 76.1
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 6.0e-97 358.2 292 67.1
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 3.0e-96 355.9 254 70.9
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-95 353.6 267 68.5
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.6e-94 350.1 241 72.6
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 4.7e-94 348.6 301 62.8
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 3.1e-93 345.9 291 64.9
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 5.8e-92 341.7 223 78.9
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.7e-91 340.1 275 66.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 7.1e-90 334.7 223 74.4
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 7.8e-89 331.3 196 83.7
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.3e-88 330.5 198 82.8
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 8.9e-85 317.8 290 60.7
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 5.8e-84 315.1 361 52.4
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.3e-83 313.9 197 78.2
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 4.2e-82 308.9 233 69.5
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 5.1e-80 302.0 298 58.4
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 3.6e-78 295.8 208 75.0
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 3.6e-78 295.8 172 82.6
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.4e-77 293.9 196 73.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 4.0e-77 292.4 370 50.0
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-71 274.2 176 77.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 3.6e-70 269.2 274 53.3
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.8e-64 250.4 225 61.8
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.3e-62 244.2 199 66.3
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 2.5e-58 229.9 220 51.4
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.5e-58 229.9 239 49.0
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 2.7e-57 226.5 232 49.1
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-55 220.7 305 47.2
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.3e-48 196.8 167 58.7
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 4.2e-42 176.0 274 44.2
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.2e-38 163.7 140 62.9
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.2e-34 149.8 91 79.1
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 3.9e-32 142.9 149 57.0
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.0e-31 140.6 117 64.1
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 4.1e-29 132.9 149 53.7
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-25 120.9 149 49.7
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.1e-23 114.8 73 82.2
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.6e-23 113.6 147 48.3
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.6e-23 113.6 78 71.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.2e-22 110.5 170 40.0
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-22 110.2 92 54.3
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 7.7e-20 102.1 82 65.9
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.9e-18 97.4 51 90.2
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-18 97.1 198 40.9
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 2.5e-18 97.1 59 78.0
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 5.5e-18 95.9 57 77.2
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 9.4e-18 95.1 198 39.4
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 2.7e-17 93.6 308 30.2
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 8.0e-17 92.0 110 48.2
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-16 91.3 55 78.2
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-16 91.3 55 78.2
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 8.8e-16 88.6 89 55.1
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 4.4e-15 86.3 231 29.4
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 3.7e-14 83.2 50 74.0
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 2.4e-13 80.5 102 48.0
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 4.5e-12 76.3 56 69.6
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 7.7e-12 75.5 91 50.5
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.2e-11 73.9 59 55.9
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.9e-10 70.9 93 47.3
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.6e-09 66.6 51 66.7
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 3.0e-08 63.5 235 22.1
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 8.8e-08 62.0 169 29.6
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 5.7e-07 59.3 208 21.6
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 1.7e-06 57.8 43 65.1
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 2.2e-06 57.4 226 24.8


User provided reference genes

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