Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 1.7e-187 659.1 314 100.0
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 2.7e-180 635.2 316 95.9
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.7e-180 635.2 314 95.5
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 8.7e-179 630.2 314 94.9
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 3.2e-173 611.7 317 90.5
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.5e-170 602.8 317 88.6
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.1e-168 596.7 317 89.3
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 3.1e-168 595.1 317 89.0
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 5.8e-167 590.9 339 83.8
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 7.6e-167 590.5 313 87.9
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 5.6e-162 574.3 315 85.7
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 6.0e-156 554.3 317 82.3
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 3.1e-152 542.0 316 80.1
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.9e-150 535.4 316 78.8
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 5.5e-149 531.2 318 79.2
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.8e-147 526.2 318 78.0
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 2.3e-147 525.8 319 77.4
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 3.0e-147 525.4 317 77.9
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 8.7e-147 523.9 319 77.4
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 1.9e-146 522.7 316 77.5
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.3e-146 521.5 320 77.8
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 5.7e-146 521.2 318 77.0
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 7.4e-146 520.8 323 77.4
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 9.7e-146 520.4 303 80.2
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.2e-145 519.2 371 68.5
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 3.7e-145 518.5 323 75.9
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 8.2e-145 517.3 319 76.8
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 2.0e-143 512.7 312 77.2
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.0e-143 512.7 316 75.3
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.5e-143 511.5 313 74.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.0e-142 510.4 316 76.3
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.3e-142 510.0 319 76.5
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 2.2e-142 509.2 312 76.6
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 6.5e-142 507.7 312 76.0
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 8.5e-142 507.3 315 75.6
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-141 506.9 319 74.6
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.9e-141 506.1 317 72.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.9e-141 506.1 322 76.1
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 2.5e-141 505.8 313 76.7
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.2e-141 505.0 316 75.6
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 5.5e-141 504.6 313 76.4
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 7.2e-141 504.2 313 76.4
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 9.4e-141 503.8 320 74.4
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.6e-140 503.1 313 76.0
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-140 503.1 313 76.0
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.6e-140 503.1 317 74.4
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.7e-140 502.3 333 71.2
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 2.7e-140 502.3 316 73.7
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.7e-140 502.3 315 74.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.6e-140 501.9 317 72.9
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 3.6e-140 501.9 320 75.0
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.6e-140 501.9 316 74.1
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.6e-140 501.5 319 74.3
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.4e-139 500.0 312 74.4
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 1.8e-139 499.6 312 74.4
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.8e-139 499.6 317 74.4
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.3e-139 499.2 316 74.4
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 3.0e-139 498.8 317 74.4
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 3.0e-139 498.8 316 74.1
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.9e-139 498.4 316 72.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 5.1e-139 498.0 312 74.0
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 6.7e-139 497.7 316 72.2
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 6.7e-139 497.7 317 74.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.1e-138 496.9 321 74.1
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.5e-138 496.5 315 72.7
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.5e-138 495.7 316 75.0
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 3.3e-138 495.4 316 73.1
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 3.3e-138 495.4 312 73.7
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 7.4e-138 494.2 312 74.0
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 7.4e-138 494.2 318 73.3
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 7.4e-138 494.2 315 72.4
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 7.4e-138 494.2 315 72.1
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 9.7e-138 493.8 316 73.4
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.3e-137 493.4 312 73.4
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 4.8e-137 491.5 316 72.2
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 4.8e-137 491.5 318 71.4
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.1e-136 488.4 312 72.1
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.1e-136 488.4 316 72.5
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.3e-136 488.0 319 71.5
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 5.3e-136 488.0 368 63.9
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 6.9e-136 487.6 320 71.9
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 6.9e-136 487.6 312 72.4
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 7.7e-135 484.2 318 71.4
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.7e-135 484.2 316 71.2
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 7.7e-135 484.2 316 72.2
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-134 483.8 320 70.0
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.7e-134 483.0 313 71.9
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.1e-133 480.3 316 69.9
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 7.2e-133 477.6 317 72.9
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.2e-132 476.9 318 70.1
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.2e-132 476.9 316 69.6
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 2.7e-132 475.7 316 70.9
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 6.1e-132 474.6 307 71.3
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.4e-131 473.4 316 69.9
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.4e-131 473.4 312 69.6
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 2.3e-131 472.6 316 69.9
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.0e-131 472.2 316 72.2
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.0e-131 472.2 316 71.8
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 3.0e-131 472.2 312 69.6
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 3.9e-131 471.9 316 69.9
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 8.8e-131 470.7 317 71.0
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 3.3e-130 468.8 323 67.5
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 4.4e-130 468.4 318 67.6
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 2.8e-129 465.7 318 68.6
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.8e-129 464.9 315 69.8
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 6.3e-129 464.5 314 70.7
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-128 463.8 317 69.1
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.1e-128 461.8 319 68.7
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 5.9e-127 458.0 391 58.8
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-126 456.8 315 69.8
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 5.0e-126 454.9 321 67.6
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 6.5e-126 454.5 318 67.3
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 2.5e-125 452.6 317 66.6
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.8e-123 444.1 319 68.3
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.1e-122 443.7 294 68.0
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.6e-122 442.6 404 56.9
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.4e-120 436.0 316 65.5
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.2e-119 433.7 316 64.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 5.0e-118 428.3 337 61.7
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.4e-115 420.2 318 64.2
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.5e-114 416.8 289 68.5
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 3.4e-114 415.6 325 60.0
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 4.4e-114 415.2 268 73.1
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.2e-113 412.9 316 63.3
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 3.1e-112 409.1 290 68.6
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.8e-110 402.1 279 68.1
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.0e-107 392.5 322 61.8
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.2e-106 390.6 339 56.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 3.4e-106 389.0 334 57.5
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.0e-103 379.8 316 59.5
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 7.7e-103 377.9 318 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.0e-102 377.5 316 56.6
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.7e-102 376.7 322 56.2
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 9.5e-101 370.9 303 62.4
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 4.4e-98 362.1 225 75.1
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.3e-97 360.5 317 55.2
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.4e-96 357.1 289 59.9
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.8e-96 356.7 185 90.8
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.6e-95 353.6 244 68.4
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 3.6e-84 315.8 200 75.0
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 5.2e-83 312.0 354 43.2
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.5e-82 310.5 151 98.0
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 6.2e-76 288.5 181 76.2
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.1e-72 277.7 218 60.6
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.7e-70 270.4 185 71.4
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.7e-65 253.8 165 71.5
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.0e-63 245.4 302 48.7
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 9.9e-58 228.0 145 73.1
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.1e-52 210.3 140 71.4
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 3.9e-46 189.5 314 39.8
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.1e-46 189.1 147 59.9
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.0e-42 177.2 125 66.4
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 4.9e-41 172.6 100 77.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.3e-38 164.5 198 46.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 3.4e-34 149.8 109 63.3
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.3e-33 147.9 69 95.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 9.3e-32 141.7 93 69.9
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-31 141.0 105 67.6
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 5.3e-27 125.9 75 69.3
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 6.5e-25 119.0 67 77.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 7.9e-23 112.1 87 60.9
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.3e-20 104.8 165 38.8
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.1e-19 101.7 58 72.4
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.4e-19 100.5 73 65.8
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.5e-18 97.8 72 65.3
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 4.8e-12 76.3 42 81.0
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 3.1e-11 73.6 81 46.9
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.5e-10 70.1 54 61.1
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 1.5e-08 64.7 42 73.8
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.2e-07 61.6 56 55.4
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.1e-07 60.8 80 46.2


User provided reference genes

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