Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 4.5e-225 784.3 390 100.0
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 2.7e-198 695.3 411 84.2
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 9.7e-196 686.8 411 83.7
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 1.5e-172 609.8 414 73.2
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 2.0e-164 582.8 402 72.4
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 3.7e-163 578.6 402 71.9
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 1.1e-162 577.0 402 70.4
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 1.9e-159 566.2 404 69.1
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 1.7e-155 553.1 402 67.9
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 1.2e-153 547.0 406 67.0
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 8.0e-150 534.3 411 64.7
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 8.0e-150 534.3 405 65.4
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 1.0e-149 533.9 408 65.0
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 5.2e-149 531.6 403 66.0
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 6.8e-149 531.2 411 63.5
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 1.5e-148 530.0 407 65.1
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 1.5e-148 530.0 407 63.9
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 2.0e-148 529.6 408 63.5
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 2.0e-148 529.6 406 65.0
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 5.8e-148 528.1 405 64.2
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 9.8e-148 527.3 408 64.7
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 1.7e-147 526.6 407 63.9
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 6.4e-147 524.6 408 64.0
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 6.4e-147 524.6 405 63.0
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 1.1e-146 523.9 401 64.8
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 1.1e-146 523.9 411 63.7
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 1.4e-146 523.5 408 62.7
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 1.9e-146 523.1 414 63.8
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 3.2e-146 522.3 408 61.8
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 6.0e-145 518.1 403 64.3
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 7.8e-145 517.7 411 62.8
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.0e-144 517.3 405 62.2
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 1.3e-144 516.9 408 61.8
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 1.7e-144 516.5 402 63.7
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.3e-144 516.2 411 62.5
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 5.0e-144 515.0 406 61.3
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 5.0e-144 515.0 407 62.2
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 5.0e-144 515.0 417 63.1
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 4.3e-143 511.9 407 63.6
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 9.5e-143 510.8 407 61.9
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 9.5e-143 510.8 412 61.7
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 9.5e-143 510.8 309 83.2
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 1.2e-142 510.4 412 63.6
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 3.6e-142 508.8 402 62.2
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 3.6e-142 508.8 426 59.6
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 3.6e-142 508.8 413 60.8
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 6.2e-142 508.1 412 62.1
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 6.2e-142 508.1 401 62.8
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 1.4e-141 506.9 406 62.3
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 1.4e-141 506.9 402 61.7
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 1.4e-141 506.9 406 62.6
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.8e-141 506.5 416 60.6
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 4.0e-141 505.4 408 61.3
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 6.8e-141 504.6 405 62.0
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 8.9e-141 504.2 410 61.2
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 8.9e-141 504.2 427 59.5
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 1.2e-140 503.8 411 62.3
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 2.6e-140 502.7 410 60.5
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 3.4e-140 502.3 409 61.9
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 4.4e-140 501.9 414 61.1
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 5.8e-140 501.5 406 62.3
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 7.5e-140 501.1 405 60.7
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 1.7e-139 500.0 401 60.8
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 2.2e-139 499.6 401 61.3
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 2.9e-139 499.2 415 61.7
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 2.1e-137 493.0 403 62.0
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 2.0e-132 476.5 402 59.2
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 2.2e-131 473.0 402 60.4
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 3.0e-128 462.6 413 58.1
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 1.1e-125 454.1 426 54.7
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 8.9e-125 451.1 409 54.8
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.6e-118 430.3 401 50.9
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 2.1e-113 413.3 314 63.1
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.1e-101 374.4 262 66.8
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 5.3e-101 372.1 297 61.6
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 6.9e-101 371.7 285 63.2
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 4.9e-99 365.5 401 46.4
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 7.1e-98 361.7 425 45.4
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.5e-97 359.4 419 43.9
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.5e-95 354.0 421 43.2
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.1e-94 350.1 404 45.3
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 3.7e-94 349.4 346 52.9
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 7.6e-92 341.7 377 46.9
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.9e-88 329.3 443 39.3
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 2.7e-81 306.6 264 60.6
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.8e-80 303.9 442 37.8
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.8e-78 296.6 454 37.4
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 1.0e-75 288.1 250 61.2
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 1.7e-70 270.8 154 86.4
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 6.7e-64 248.8 291 46.7
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 5.2e-56 222.6 262 46.2
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.7e-54 217.6 258 50.0
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 8.3e-54 215.3 149 65.8
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 4.1e-53 213.0 142 69.7
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 2.2e-51 207.2 142 67.6
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.0e-48 198.4 202 53.5
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 5.2e-48 196.1 166 50.6
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 6.8e-40 169.1 254 40.9
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 2.6e-39 167.2 126 65.1
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 4.4e-39 166.4 125 56.8
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 2.0e-31 141.0 107 57.9
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.2e-28 131.7 92 67.4
arahy.Tifrunner.gnm1.ann1.UQ0TL8 Arachis hypogaea HOM05D006847 ORTHO05D008685 2.1e-25 120.9 94 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 6.4e-22 109.4 110 47.3
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 1.2e-20 105.1 50 88.0
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.3e-19 100.9 221 31.7
SMO143G0243 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.5e-18 98.2 103 45.6
SMO143G0192 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.1e-17 94.4 116 42.2
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 3.1e-16 90.5 146 37.0
SMO186G0008 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 6.8e-16 89.4 103 42.7
Sabra10G0104900 Salix brachista HOM05D006847 ORTHO05D008685 1.5e-15 88.2 103 47.6
Actinidia31922 Actinidia chinensis HOM05D006847 ORTHO05D008685 4.4e-15 86.7 57 64.9
SMO265G0021 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 7.6e-15 85.9 116 41.4
Solyc01g081280.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.4e-13 81.6 51 68.6
CAN.G992.5 Capsicum annuum HOM05D006847 ORTHO05D008685 7.8e-12 75.9 205 31.2
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.4e-08 65.1 160 28.8
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.2e-07 62.0 160 25.6
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 1.5e-07 61.6 143 32.2
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.5e-07 61.6 160 26.2
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 2.0e-07 61.2 160 25.6
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 4.4e-07 60.1 160 24.4
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 5.8e-07 59.7 160 23.1
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 5.8e-07 59.7 168 23.8
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 5.8e-07 59.7 160 26.2
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 5.8e-07 59.7 160 26.2
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 5.8e-07 59.7 160 24.4
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 5.8e-07 59.7 160 24.4
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 7.6e-07 59.3 160 23.1
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 7.6e-07 59.3 160 26.9
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 7.6e-07 59.3 160 23.1
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 7.6e-07 59.3 160 23.1
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 23.1
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 23.1
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 23.1
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 23.1
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 23.1
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 26.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 23.1
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 9.9e-07 58.9 160 23.1
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 1.7e-06 58.2 160 22.5
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.9e-06 57.4 159 25.8


User provided reference genes

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