Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 2.4e-131 474.2 350 100.0
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 5.1e-97 360.1 346 82.7
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 7.4e-96 356.3 344 83.7
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 4.5e-93 347.1 352 83.5
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 3.1e-86 324.3 346 80.1
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 7.9e-74 283.1 345 73.3
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 5.1e-73 280.4 359 71.0
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 2.0e-69 268.5 351 73.5
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 4.5e-69 267.3 351 72.4
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 8.5e-68 263.1 348 69.5
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 1.1e-64 252.7 324 73.8
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 1.1e-64 252.7 324 73.8
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 2.0e-48 198.7 305 68.2
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 2.6e-48 198.4 334 63.5
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 1.3e-47 196.1 350 61.4
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 2.8e-47 194.9 350 62.6
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 1.1e-46 193.0 330 63.6
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 7.0e-46 190.3 308 66.2
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 2.0e-45 188.7 337 61.4
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 1.3e-44 186.0 347 63.7
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 2.9e-44 184.9 344 61.9
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 2.9e-44 184.9 344 61.0
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 3.8e-44 184.5 344 60.5
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 8.6e-44 183.3 299 68.2
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.5e-43 182.6 347 63.4
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 4.2e-43 181.0 142 59.9
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 7.2e-43 180.3 349 60.5
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 1.2e-42 179.5 323 65.9
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 1.4e-41 176.0 142 58.5
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 2.3e-41 175.3 144 55.6
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 6.8e-41 173.7 142 55.6
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 1.5e-40 172.6 148 54.1
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 1.7e-39 169.1 140 56.4
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 1.8e-38 165.6 154 51.3
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 4.5e-37 161.0 144 54.9
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 2.3e-36 158.7 146 53.4
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 8.6e-36 156.8 141 58.2
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 8.6e-36 156.8 175 50.3
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 5.6e-35 154.1 141 56.0
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 9.5e-35 153.3 139 57.6
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 9.5e-35 153.3 309 61.5
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 2.1e-34 152.1 140 51.4
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 2.8e-34 151.8 137 56.2
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 3.0e-33 148.3 185 44.3
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 5.7e-32 144.1 206 44.7
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 4.9e-31 141.0 138 51.4
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 6.4e-31 140.6 158 46.2
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 8.3e-31 140.2 144 50.0
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 3.2e-30 138.3 308 37.7
Aqoxy5G04288 Aquilegia oxysepala HOM05D007570 ORTHO05D009365 1.6e-29 136.0 327 57.2
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 5.0e-28 131.0 145 45.5
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 8.6e-28 130.2 147 46.9
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.5e-27 129.4 156 46.2
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 7.3e-27 127.1 146 46.6
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 9.5e-27 126.7 100 58.0
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 9.5e-27 126.7 201 41.3
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 2.1e-26 125.6 144 44.4
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 6.2e-26 124.0 239 69.9
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 8.0e-26 123.6 303 59.1
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 4.0e-25 121.3 153 45.1
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 3.4e-24 118.2 140 45.7
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 9.8e-24 116.7 99 57.6
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 4.9e-23 114.4 105 55.2
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 6.4e-23 114.0 144 44.4
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 1.4e-22 112.8 141 42.6
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 3.2e-22 111.7 108 50.9
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 4.1e-22 111.3 144 41.7
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 5.4e-22 110.9 140 41.4
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 3.5e-21 108.2 137 46.0
HanXRQChr10g0294781 Helianthus annuus HOM05D007570 ORTHO05D009365 4.6e-21 107.8 152 42.8
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 1.3e-20 106.3 149 43.6
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 1.3e-20 106.3 149 43.6
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 3.9e-20 104.8 137 43.8
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 5.0e-20 104.4 137 43.8
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 4.3e-19 101.3 171 37.4
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 9.5e-19 100.1 108 46.3
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 8.1e-18 97.1 153 39.2
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 4.0e-17 94.7 142 38.0
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 3.7e-15 88.2 80 47.5
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 3.7e-15 88.2 145 40.7
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 2.1e-13 82.4 316 54.1
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 4.6e-13 81.3 233 27.0
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 6.0e-13 80.9 63 61.9
Glyma.13G181601 Glycine max HOM05D007570 ORTHO05D009365 3.0e-12 78.6 53 67.9
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 3.9e-12 78.2 107 46.7
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 1.1e-11 76.6 123 38.2
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 3.6e-10 71.6 137 32.8
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 8.1e-10 70.5 114 31.6
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.2e-08 66.6 128 32.8
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 2.0e-08 65.9 193 26.4
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 2.0e-08 65.9 52 55.8
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 4.4e-08 64.7 136 31.6
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 5.8e-08 64.3 128 31.2
ECA234G3939 Erigeron canadensis HOM05D007570 ORTHO05D009365 7.6e-08 63.9 99 35.4
FAN02G2208 Fragaria x ananassa HOM05D000001 ORTHO05D009676 7.6e-08 63.9 112 34.8
Lj5C430G7 Lonicera japonica HOM05D007570 ORTHO05D009365 7.6e-08 63.9 136 34.6
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 9.9e-08 63.5 157 29.9
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 9.9e-08 63.5 128 28.9
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 9.9e-08 63.5 128 28.9
VMungo1215G2284 Vigna mungo HOM05D000001 ORTHO05D009676 1.3e-07 63.2 127 29.9
AagrBONN_evm.TU.Sc2ySwM_228.2344 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-07 62.4 128 29.7
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 2.2e-07 62.4 166 31.3
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 2.2e-07 62.4 166 31.3
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 2.9e-07 62.0 128 28.1
FvH4_6g14840 Fragaria vesca HOM05D000001 ORTHO05D009676 2.9e-07 62.0 127 30.7
AagrBONN_evm.TU.Sc2ySwM_362.563 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.8e-07 61.6 132 28.8
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 3.8e-07 61.6 136 27.9
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 3.8e-07 61.6 157 32.5
Manes.02G197400 Manihot esculenta HOM05D000001 ORTHO05D000003 6.4e-07 60.8 127 29.9
AagrBONN_evm.TU.Sc2ySwM_228.823 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-06 60.1 131 32.8
AL1G16720 Arabidopsis lyrata HOM05D007128 ORTHO05D009059 1.1e-06 60.1 131 27.5
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 1.1e-06 60.1 166 30.1
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.4e-06 59.7 128 29.7
FAN10G0762 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-06 59.3 161 30.4
FAN14G2032 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.9e-06 59.3 112 32.1
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 1.9e-06 59.3 128 26.6
AagrBONN_evm.TU.Sc2ySwM_228.1187 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-06 58.9 130 29.2
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 2.4e-06 58.9 156 26.3
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 2.4e-06 58.9 128 28.9
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 2.4e-06 58.9 139 27.3
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 2.4e-06 58.9 128 27.3
HanXRQChr06g0172221 Helianthus annuus HOM05D007486 ORTHO05D003673 2.4e-06 58.9 133 33.8
Lalb_Chr17g0345131 Lupinus albus HOM05D000001 ORTHO05D000003 2.4e-06 58.9 162 26.5
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 2.4e-06 58.9 128 31.2
AagrBONN_evm.TU.Sc2ySwM_362.1352 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-06 58.5 130 29.2
EL10Ac6g14919 Beta vulgaris HOM05D000891 ORTHO05D000761 3.2e-06 58.5 138 32.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.2e-06 58.5 135 27.4
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 3.2e-06 58.5 136 27.2
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 3.2e-06 58.5 127 29.9
THA.LOC104810226 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 3.2e-06 58.5 130 30.0
THA.LOC104822649 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 3.2e-06 58.5 130 30.0
Medtr1g039290 Medicago truncatula HOM05D010072 ORTHO05D011797 4.1e-06 58.2 135 26.7
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 4.1e-06 58.2 128 28.1
A01p12640 Brassica napus HOM05D000001 ORTHO05D000003 5.4e-06 57.8 164 25.0
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 5.4e-06 57.8 90 32.2
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.4e-06 57.8 128 27.3
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.4e-06 57.8 128 27.3
Lalb_Chr10g0103361 Lupinus albus HOM05D000001 ORTHO05D000003 5.4e-06 57.8 162 25.9
Phvul.003G140000 Phaseolus vulgaris HOM05D000001 ORTHO05D009676 5.4e-06 57.8 118 29.7
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 5.4e-06 57.8 136 27.2
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 5.4e-06 57.8 136 27.2
Sed0007237 Sechium edule HOM05D000862 ORTHO05D000003 5.4e-06 57.8 161 28.0
AagrBONN_evm.TU.Sc2ySwM_344.5582__5583 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-06 57.4 130 29.2
QL02p010234 Quercus lobata HOM05D000001 ORTHO05D000003 7.1e-06 57.4 162 25.9
HPP92_022336 Vanilla planifolia HOM05D001779 ORTHO05D001753 7.1e-06 57.4 133 28.6
AagrBONN_evm.TU.Sc2ySwM_340.207 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.2e-06 57.0 133 27.8
AagrBONN_evm.TU.Sc2ySwM_368.2687 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.2e-06 57.0 130 29.2
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 9.2e-06 57.0 52 51.9
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 9.2e-06 57.0 52 51.9
SGA_v2.0_scaffold58G20344 Striga asiatica HOM05D000267 ORTHO05D002764 9.2e-06 57.0 131 29.0
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 9.2e-06 57.0 128 28.9


User provided reference genes

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