Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g059570 Medicago truncatula HOM05D005366 ORTHO05D006323 1.9e-101 372.5 184 100.0
Medtr1g009610 Medicago truncatula HOM05D005366 ORTHO05D006323 1.8e-46 189.9 109 89.0
Psat0s839g0040 Pisum sativum HOM05D005366 ORTHO05D006323 4.3e-45 185.3 132 75.8
Ca_01524_v3 Cicer arietinum L. HOM05D005366 ORTHO05D006323 1.6e-44 183.3 132 73.5
TPR.G12019 Trifolium pratense HOM05D005366 ORTHO05D006323 1.4e-43 180.3 132 73.5
Lj5g0008306 Lotus japonicus HOM05D005366 ORTHO05D006323 4.5e-42 175.3 109 80.7
Phvul.001G060300 Phaseolus vulgaris HOM05D005366 ORTHO05D006323 7.6e-42 174.5 109 81.7
Glyma.14G135900 Glycine max HOM05D005366 ORTHO05D006323 1.7e-41 173.3 109 83.5
TPR.G21359 Trifolium pratense HOM05D005366 ORTHO05D006323 1.7e-41 173.3 109 82.6
VMungo0647G1874 Vigna mungo HOM05D005366 ORTHO05D006323 6.5e-41 171.4 109 81.7
Glyma.17G197200 Glycine max HOM05D005366 ORTHO05D006323 6.7e-38 161.4 99 83.8
arahy.Tifrunner.gnm1.ann1.KT3XM2 Arachis hypogaea HOM05D005366 ORTHO05D006323 4.8e-36 155.2 104 76.0
arahy.Tifrunner.gnm1.ann1.MFD0CQ Arachis hypogaea HOM05D005366 ORTHO05D006323 4.8e-36 155.2 104 76.0
Lalb_Chr22g0361211 Lupinus albus HOM05D005366 ORTHO05D006323 1.2e-34 150.6 109 72.5
Potri.018G008600 Populus trichocarpa HOM05D005366 ORTHO05D006323 4.3e-29 132.1 123 54.5
Hma1.2p1_0272F.1_g109220 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 1.3e-28 130.6 110 60.0
TWI63G1827 Tripterygium wilfordii HOM05D005366 ORTHO05D006323 1.6e-28 130.2 111 61.3
QL12p025430 Quercus lobata HOM05D005366 ORTHO05D006323 3.7e-28 129.0 108 63.0
MD15G1106500 Malus domestica HOM05D005366 ORTHO05D006323 4.8e-28 128.6 109 62.4
Atru.chr7.2660 Acer truncatum HOM05D005366 ORTHO05D006323 3.1e-27 125.9 110 60.0
Gohir.A05G063400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 3.1e-27 125.9 123 55.3
Manes.16G134600 Manihot esculenta HOM05D005366 ORTHO05D006323 4.1e-27 125.6 126 54.0
Gohir.D05G066000 Gossypium hirsutum HOM05D005366 ORTHO05D006323 9.0e-27 124.4 123 55.3
Gorai.009G066800 Gossypium raimondii HOM05D005366 ORTHO05D006323 9.0e-27 124.4 123 55.3
SalBow4G0033 Salvia bowleyana HOM05D005366 ORTHO05D006323 2.0e-26 123.2 115 57.4
Thecc.09G008500 Theobroma cacao HOM05D005366 ORTHO05D006323 2.6e-26 122.9 123 54.5
CSS0028290 Camellia sinensis var. sinensis HOM05D005366 ORTHO05D006323 3.4e-26 122.5 123 54.5
CSS0043382 Camellia sinensis var. sinensis HOM05D005366 ORTHO05D006323 3.4e-26 122.5 123 54.5
MELO3C003621.2 Cucumis melo HOM05D005366 ORTHO05D006323 4.5e-26 122.1 108 57.4
Duzib168G0091 Durio zibethinus HOM05D005366 ORTHO05D006323 5.9e-26 121.7 123 53.7
FAN15G0510 Fragaria x ananassa HOM05D005366 ORTHO05D006323 1.0e-25 120.9 110 59.1
MD08G1126800 Malus domestica HOM05D005366 ORTHO05D006323 1.3e-25 120.6 108 60.2
RcHm_v2.0_Chr6g0305291 Rosa chinensis HOM05D005366 ORTHO05D006323 1.3e-25 120.6 107 59.8
RcHm_v2.0_Chr6g0305121 Rosa chinensis HOM05D005366 ORTHO05D006323 1.7e-25 120.2 107 59.8
Prupe.1G459000 Prunus persica HOM05D005366 ORTHO05D006323 5.0e-25 118.6 108 60.2
Haze_21759 Corylus avellana HOM05D005366 ORTHO05D006323 8.5e-25 117.9 118 56.8
Oeu053860.1 Olea europaea HOM05D005366 ORTHO05D006323 8.5e-25 117.9 109 57.8
FAN20G2855 Fragaria x ananassa HOM05D005366 ORTHO05D006323 1.1e-24 117.5 107 57.9
COL.COLO4_30023 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.4e-24 117.1 123 53.7
FvH4_2g36740 Fragaria vesca HOM05D005366 ORTHO05D006323 1.9e-24 116.7 107 57.0
Gohir.A07G002100 Gossypium hirsutum HOM05D005366 ORTHO05D006323 2.5e-24 116.3 123 51.2
Gohir.D07G002400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 2.5e-24 116.3 123 51.2
Gorai.001G002300 Gossypium raimondii HOM05D005366 ORTHO05D006323 2.5e-24 116.3 123 51.2
Sed0008947 Sechium edule HOM05D005366 ORTHO05D006323 2.5e-24 116.3 108 56.5
vmacro00028 Vaccinium macrocarpon HOM05D005366 ORTHO05D006323 2.5e-24 116.3 157 45.9
CsaV3_3G047150 Cucumis sativus L. HOM05D005366 ORTHO05D006323 3.2e-24 115.9 108 54.6
Solyc08g006420.3 Solanum lycopersicum HOM05D005366 ORTHO05D006323 4.2e-24 115.5 107 58.9
EL10Ac2g02416 Beta vulgaris HOM05D005366 ORTHO05D006323 5.5e-24 115.2 138 49.3
Actinidia06431 Actinidia chinensis HOM05D005366 ORTHO05D006323 9.4e-24 114.4 123 52.8
Ah.12g061220 Amaranthus hybridus HOM05D005366 ORTHO05D006323 1.6e-23 113.6 108 51.9
FAN27G2425 Fragaria x ananassa HOM05D005366 ORTHO05D006323 2.1e-23 113.2 107 56.1
CiPaw.07G211400 Carya illinoinensis HOM05D005366 ORTHO05D006323 2.7e-23 112.8 108 58.3
Sopen08g002360 Solanum pennellii HOM05D005366 ORTHO05D006323 3.6e-23 112.5 107 57.0
Sc06g0000200 Simmondsia chinensis HOM05D005366 ORTHO05D006323 4.6e-23 112.1 119 50.4
CAN.G673.20 Capsicum annuum HOM05D005366 ORTHO05D006323 6.1e-23 111.7 109 55.0
Dinv04518 Davidia involucrata HOM05D005366 ORTHO05D006323 6.1e-23 111.7 103 57.3
Lj7C748G6 Lonicera japonica HOM05D005366 ORTHO05D006323 1.0e-22 110.9 107 55.1
Thhalv10024180m.g Eutrema salsugineum HOM05D005366 ORTHO05D006323 1.8e-22 110.2 109 53.2
AL7G20470 Arabidopsis lyrata HOM05D005366 ORTHO05D006323 2.3e-22 109.8 110 51.8
Nitab4.5_0000555g0160 Nicotiana tabacum HOM05D005366 ORTHO05D006323 2.3e-22 109.8 109 53.2
Rhsim11G0005000 Rhododendron simsii HOM05D005366 ORTHO05D006323 2.3e-22 109.8 110 55.5
CARHR239450 Cardamine hirsuta HOM05D005366 ORTHO05D006323 3.0e-22 109.4 111 50.5
GSVIVG01033178001 Vitis vinifera HOM05D005366 ORTHO05D006323 3.0e-22 109.4 104 56.7
Cc08_g06500 Coffea canephora HOM05D005366 ORTHO05D006323 3.9e-22 109.0 111 54.1
TAR625G1380 Trochodendron aralioides HOM05D005366 ORTHO05D006323 3.9e-22 109.0 123 48.0
AUR62037714 Chenopodium quinoa HOM05D005366 ORTHO05D006323 5.1e-22 108.6 111 50.5
AUR62020289 Chenopodium quinoa HOM05D005366 ORTHO05D006323 6.7e-22 108.2 111 50.5
Carub.0007s0900 Capsella rubella HOM05D005366 ORTHO05D006323 8.8e-22 107.8 103 54.4
Nitab4.5_0008193g0020 Nicotiana tabacum HOM05D005366 ORTHO05D006323 8.8e-22 107.8 109 52.3
COL.COLO4_19020 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.5e-21 107.1 131 48.9
Peaxi162Scf00045g00173 Petunia axillaris HOM05D005366 ORTHO05D006323 2.0e-21 106.7 108 52.8
Sp7g29400 Schrenkiella parvula HOM05D005366 ORTHO05D006323 2.5e-21 106.3 111 50.5
BcaNung04128 Brassica carinata HOM05D005366 ORTHO05D006323 3.3e-21 105.9 109 51.4
MSTRG.25794 Avicennia marina HOM05D005366 ORTHO05D006323 9.7e-21 104.4 108 53.7
A03p60870 Brassica napus HOM05D005366 ORTHO05D006323 3.7e-20 102.4 103 52.4
BraA03t15125Z Brassica rapa HOM05D005366 ORTHO05D006323 3.7e-20 102.4 103 52.4
BcaNung01513 Brassica carinata HOM05D005366 ORTHO05D006323 8.2e-20 101.3 103 51.5
C07p58760 Brassica napus HOM05D005366 ORTHO05D006323 8.2e-20 101.3 103 51.5
BolC7t46324H Brassica oleracea HOM05D005366 ORTHO05D006323 8.2e-20 101.3 103 51.5
ATR0580G390 Amborella trichopoda HOM05D005366 ORTHO05D006323 4.1e-19 99.0 109 45.9
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 4.1e-19 99.0 108 49.1
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 4.1e-19 99.0 108 49.1
Ciclev10007223m.g Citrus clementina HOM05D005366 ORTHO05D006323 6.9e-19 98.2 123 48.8
SGA_v2.0_scaffold193G40671 Striga asiatica HOM05D005366 ORTHO05D006323 6.9e-19 98.2 158 38.0
THA.LOC104803624 Tarenaya hassleriana HOM05D005366 ORTHO05D006323 6.9e-19 98.2 91 54.9
Nn8g40726 Nelumbo nucifera HOM05D005366 ORTHO05D006323 1.2e-18 97.4 144 41.7
PGR119G1611 Punica granatum HOM05D005366 ORTHO05D006323 1.2e-18 97.4 143 41.3
Aqoxy7G02854 Aquilegia oxysepala HOM05D005366 ORTHO05D006323 1.5e-18 97.1 110 46.4
C01p07430 Brassica napus HOM05D005366 ORTHO05D006323 5.9e-18 95.1 102 50.0
PSO063G0316 Papaver somniferum HOM05D005366 ORTHO05D006323 5.9e-18 95.1 126 40.5
BolC1t00725H Brassica oleracea HOM05D005366 ORTHO05D006323 1.3e-17 94.0 102 49.0
Aa31LG2G18730 Aethionema arabicum HOM05D005366 ORTHO05D006323 1.7e-17 93.6 102 45.1
Lsat_1_v5_gn_5_61021 Lactuca sativa HOM05D005366 ORTHO05D006323 1.7e-17 93.6 99 50.5
PSO170G4550 Papaver somniferum HOM05D005366 ORTHO05D006323 2.9e-17 92.8 123 40.7
DCAR_000688 Daucus carota HOM05D005366 ORTHO05D006323 5.0e-17 92.0 105 46.7
unitig_32.g11652 Utricularia gibba HOM05D005366 ORTHO05D006323 1.4e-16 90.5 116 44.8
CANSAT25G3462 Cannabis sativa HOM05D005366 ORTHO05D006323 7.2e-16 88.2 97 50.5
ECA240G0683 Erigeron canadensis HOM05D005366 ORTHO05D006323 3.6e-15 85.9 108 43.5
HanXRQChr03g0082501 Helianthus annuus HOM05D005366 ORTHO05D006323 6.1e-15 85.1 108 43.5
MBI16_g05842_MAGBIO Magnolia biondii HOM05D005366 ORTHO05D006323 1.1e-13 80.9 96 46.9
HPP92_018359 Vanilla planifolia HOM05D005366 ORTHO05D006323 1.7e-12 77.0 122 41.8
BcaC09g51938 Brassica carinata HOM05D005366 ORTHO05D006323 1.1e-11 74.3 78 50.0
Zm00001eb232290 Zea mays HOM05D005366 ORTHO05D006323 1.8e-11 73.6 108 42.6
SEGI_23098 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 6.5e-09 65.1 110 34.5
CDE07G1832 Ceratophyllum demersum HOM05D005366 ORTHO05D006323 3.2e-08 62.8 109 32.1
AT4G31570 Arabidopsis thaliana HOM05D005366 ORTHO05D006323 4.7e-07 58.9 48 64.6


User provided reference genes

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