Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g058280 Medicago truncatula HOM05D001101 ORTHO05D000893 3.5e-152 541.6 274 100.0
Ca_06629_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 7.5e-70 268.1 222 70.3
Lj3g0027156 Lotus japonicus HOM05D001101 ORTHO05D000893 6.0e-51 205.3 263 52.9
QL08p025698 Quercus lobata HOM05D001101 ORTHO05D000893 4.5e-46 189.1 220 52.3
Glyma.13G268500 Glycine max HOM05D001101 ORTHO05D000893 1.7e-45 187.2 238 51.3
Lalb_Chr03g0031231 Lupinus albus HOM05D001101 ORTHO05D000893 8.4e-45 184.9 266 51.1
Gohir.A04G043400 Gossypium hirsutum HOM05D001101 ORTHO05D000893 1.1e-44 184.5 219 49.8
arahy.Tifrunner.gnm1.ann1.I5PA0N Arachis hypogaea HOM05D001101 ORTHO05D000893 1.9e-44 183.7 235 52.8
VMungo1080G1788 Vigna mungo HOM05D001101 ORTHO05D000893 4.2e-44 182.6 250 48.8
Gorai.009G366600 Gossypium raimondii HOM05D001101 ORTHO05D000893 5.4e-44 182.2 267 44.2
Gohir.D05G340200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 9.3e-44 181.4 219 48.9
Phvul.005G081000 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 2.7e-43 179.9 249 48.6
VMungo1127G0294 Vigna mungo HOM05D001101 ORTHO05D000893 2.7e-43 179.9 254 47.2
arahy.Tifrunner.gnm1.ann1.R550IY Arachis hypogaea HOM05D001101 ORTHO05D000893 6.0e-43 178.7 235 51.9
Prupe.4G160200 Prunus persica HOM05D001101 ORTHO05D000893 7.9e-43 178.3 240 47.5
CiPaw.12G112600 Carya illinoinensis HOM05D001101 ORTHO05D000893 1.8e-42 177.2 219 49.3
RcHm_v2.0_Chr5g0030571 Rosa chinensis HOM05D001101 ORTHO05D000893 3.9e-42 176.0 220 51.4
Thecc.07G126600 Theobroma cacao HOM05D001101 ORTHO05D000893 5.6e-41 172.2 220 48.6
FAN16G1275 Fragaria x ananassa HOM05D001101 ORTHO05D000893 7.4e-41 171.8 222 50.0
FvH4_3g18140 Fragaria vesca HOM05D001101 ORTHO05D000893 4.8e-40 169.1 220 50.0
TWI38G2134 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 4.8e-40 169.1 226 45.1
FAN11G2831 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.1e-39 167.9 220 49.5
Eucgr.F03283 Eucalyptus grandis HOM05D001101 ORTHO05D000893 1.4e-39 167.5 219 48.4
TWI39G0632 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 1.4e-39 167.5 226 45.1
Haze_09306 Corylus avellana HOM05D001101 ORTHO05D000893 2.4e-39 166.8 229 45.4
FAN25G0535 Fragaria x ananassa HOM05D001101 ORTHO05D000893 4.0e-39 166.0 256 44.5
ClCG07G010190 Citrullus lanatus HOM05D001101 ORTHO05D000893 6.9e-39 165.2 251 44.6
FAN21G1665 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.2e-38 164.5 222 49.1
COL.COLO4_17509 Corchorus olitorius HOM05D001101 ORTHO05D000893 2.6e-38 163.3 223 47.5
Sed0014809 Sechium edule HOM05D001101 ORTHO05D000893 2.6e-38 163.3 253 43.9
Manes.03G099900 Manihot esculenta HOM05D001101 ORTHO05D000893 3.4e-38 162.9 220 45.9
Sabra16G0254800 Salix brachista HOM05D001101 ORTHO05D000893 3.4e-38 162.9 218 46.3
Cfa019545 Carpinus fangiana HOM05D001101 ORTHO05D000893 5.8e-38 162.2 219 45.2
Sabra11G0095800 Salix brachista HOM05D001101 ORTHO05D000893 1.7e-37 160.6 221 45.2
Cpa.g.sc77.33 Carica papaya HOM05D001101 ORTHO05D000893 2.2e-37 160.2 204 52.0
Manes.15G096600 Manihot esculenta HOM05D001101 ORTHO05D000893 2.2e-37 160.2 204 48.5
Lalb_Chr20g0109211 Lupinus albus HOM05D001101 ORTHO05D000893 2.9e-37 159.8 242 45.9
Duzib213G1057 Durio zibethinus HOM05D001101 ORTHO05D000893 4.9e-37 159.1 219 45.7
Lj3g0007321 Lotus japonicus HOM05D001101 ORTHO05D000893 1.9e-36 157.1 223 49.8
Dinv18380 Davidia involucrata HOM05D001101 ORTHO05D000893 3.2e-36 156.4 225 46.7
GSVIVG01014170001 Vitis vinifera HOM05D001101 ORTHO05D000893 7.1e-36 155.2 228 44.7
Psat0s2485g0080 Pisum sativum HOM05D001101 ORTHO05D000893 9.3e-36 154.8 218 47.7
Potri.011G107800 Populus trichocarpa HOM05D001101 ORTHO05D000893 7.9e-35 151.8 206 46.1
CANSAT35G0774 Cannabis sativa HOM05D001101 ORTHO05D000893 5.1e-34 149.1 227 46.7
Actinidia18809 Actinidia chinensis HOM05D001101 ORTHO05D000893 1.1e-33 147.9 245 44.9
TAR626G0991 Trochodendron aralioides HOM05D001101 ORTHO05D000893 1.5e-33 147.5 224 45.1
MELO3C016123.2 Cucumis melo HOM05D001101 ORTHO05D000893 5.6e-33 145.6 236 43.6
Potri.001G387500 Populus trichocarpa HOM05D001101 ORTHO05D000893 5.6e-33 145.6 204 45.6
TAR627G0318 Trochodendron aralioides HOM05D001101 ORTHO05D000893 7.4e-33 145.2 234 41.0
Rhsim06G0210100 Rhododendron simsii HOM05D001101 ORTHO05D000893 9.6e-33 144.8 218 45.0
CsaV3_4G008130 Cucumis sativus L. HOM05D001101 ORTHO05D000893 2.8e-32 143.3 243 42.4
CiPaw.11G158700 Carya illinoinensis HOM05D001101 ORTHO05D000893 3.7e-32 142.9 219 43.8
Ciclev10019902m.g Citrus clementina HOM05D001101 ORTHO05D000893 3.7e-32 142.9 235 43.0
Cc05_g10950 Coffea canephora HOM05D001101 ORTHO05D000893 1.4e-31 141.0 212 45.8
Lj8A147G49 Lonicera japonica HOM05D001101 ORTHO05D000893 1.2e-30 137.9 217 42.9
CSS0019453 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 4.5e-30 136.0 202 46.5
Hma1.2p1_1650F.1_g295650 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 1.7e-29 134.0 197 47.2
AUR62019596 Chenopodium quinoa HOM05D001101 ORTHO05D000893 2.9e-29 133.3 208 43.8
Hma1.2p1_1872F.1_g306120 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 2.9e-29 133.3 197 47.2
Oeu031024.1 Olea europaea HOM05D001101 ORTHO05D000893 3.8e-29 132.9 192 45.8
SalBow1G6953 Salvia bowleyana HOM05D001101 ORTHO05D000893 6.5e-29 132.1 202 47.5
Medtr2g075860 Medicago truncatula HOM05D001101 ORTHO05D000893 8.4e-29 131.7 247 42.9
AUR62037563 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.1e-28 131.3 208 42.3
Eucgr.L01895 Eucalyptus grandis HOM05D001101 ORTHO05D000893 1.1e-28 131.3 135 57.8
vmacro11953 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 1.1e-28 131.3 227 41.4
SalBow8G2079 Salvia bowleyana HOM05D001101 ORTHO05D000893 4.2e-28 129.4 202 46.5
Nn3g21084 Nelumbo nucifera HOM05D001101 ORTHO05D000893 5.5e-28 129.0 246 38.2
TPR.G16052 Trifolium pratense HOM05D001101 ORTHO05D000893 7.1e-28 128.6 152 53.9
EL10Ac9g23028 Beta vulgaris HOM05D001101 ORTHO05D000893 4.6e-27 125.9 237 40.1
Peaxi162Scf00111g01465 Petunia axillaris HOM05D001101 ORTHO05D000893 7.9e-27 125.2 191 45.0
CSS0031512 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 1.3e-26 124.4 195 44.1
DCAR_013271 Daucus carota HOM05D001101 ORTHO05D000893 1.3e-26 124.4 208 42.3
Aa31LG8G2070 Aethionema arabicum HOM05D001101 ORTHO05D000893 1.5e-25 120.9 218 43.6
MSTRG.6684 Avicennia marina HOM05D001101 ORTHO05D000893 1.5e-25 120.9 204 42.6
Ah.06g185540 Amaranthus hybridus HOM05D001101 ORTHO05D000893 4.3e-25 119.4 196 40.3
CDE10G0134 Ceratophyllum demersum HOM05D001101 ORTHO05D000893 4.3e-25 119.4 235 37.9
Glyma.12G231033 Glycine max HOM05D001101 ORTHO05D000893 4.3e-25 119.4 149 51.0
Nn6g34473 Nelumbo nucifera HOM05D001101 ORTHO05D000893 5.7e-25 119.0 232 38.4
Nitab4.5_0000788g0050 Nicotiana tabacum HOM05D001101 ORTHO05D000893 7.4e-25 118.6 236 39.8
Sc03g0010600 Simmondsia chinensis HOM05D001101 ORTHO05D000893 9.7e-25 118.2 232 39.7
Sp3g13070 Schrenkiella parvula HOM05D001101 ORTHO05D000893 4.8e-24 115.9 222 43.2
Nitab4.5_0016997g0010 Nicotiana tabacum HOM05D001101 ORTHO05D000893 1.8e-23 114.0 236 39.0
AL3G27180 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 4.1e-23 112.8 225 43.6
Thhalv10020396m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 4.1e-23 112.8 223 43.9
MD11G1265700 Malus domestica HOM05D001101 ORTHO05D000893 6.9e-23 112.1 149 49.7
A03p39010 Brassica napus HOM05D001101 ORTHO05D000893 1.5e-22 110.9 228 42.5
Solyc07g062300.3 Solanum lycopersicum HOM05D001101 ORTHO05D000893 2.6e-22 110.2 234 40.6
Aqoxy1G01983 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 3.4e-22 109.8 163 43.6
Sopen07g030570 Solanum pennellii HOM05D001101 ORTHO05D000893 4.5e-22 109.4 234 40.2
BcaB04g20957 Brassica carinata HOM05D001101 ORTHO05D000893 5.9e-22 109.0 218 43.6
unitig_747.g21588 Utricularia gibba HOM05D001101 ORTHO05D000893 5.9e-22 109.0 208 36.1
CAN.G375.25 Capsicum annuum HOM05D001101 ORTHO05D000893 1.0e-21 108.2 193 41.5
CARHR089800 Cardamine hirsuta HOM05D001101 ORTHO05D000893 1.0e-21 108.2 216 42.6
ECA236G1330 Erigeron canadensis HOM05D001101 ORTHO05D000893 1.3e-21 107.8 213 41.3
MBI07_g00455_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 2.2e-21 107.1 216 38.0
PGSC0003DMG400007097 Solanum tuberosum HOM05D001101 ORTHO05D000893 6.5e-21 105.5 195 40.5
Os02g0234200 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 1.1e-20 104.8 255 37.3
BolC3t16997H Brassica oleracea HOM05D001101 ORTHO05D000893 1.9e-20 104.0 250 38.4
C03p47290 Brassica napus HOM05D001101 ORTHO05D000893 2.5e-20 103.6 268 37.7
SGA_v2.0_scaffold73G24397 Striga asiatica HOM05D001101 ORTHO05D000893 4.2e-20 102.8 189 41.3
MELO3C025648.2 Cucumis melo HOM05D001101 ORTHO05D000893 7.2e-20 102.1 226 38.5
CsaV3_4G033000 Cucumis sativus L. HOM05D001101 ORTHO05D000893 7.2e-20 102.1 237 38.8
BraA03t13051Z Brassica rapa HOM05D001101 ORTHO05D000893 1.2e-19 101.3 231 41.1
MBI06_g16699_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 2.1e-19 100.5 287 33.1
AT3G14860 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 6.1e-19 99.0 242 40.5
MSTRG.14970 Avicennia marina HOM05D001101 ORTHO05D000893 6.1e-19 99.0 184 40.2
THA.LOC104815575 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 5.1e-18 95.9 218 39.4
Hund10538 Selenicereus undatus HOM05D001101 ORTHO05D000893 6.7e-18 95.5 240 32.9
ClCG11G017370 Citrullus lanatus HOM05D001101 ORTHO05D000893 9.7e-17 91.7 226 35.8
Carub.0003s1452 Capsella rubella HOM05D001101 ORTHO05D000893 1.7e-16 90.9 215 38.6
PSO675G9353 Papaver somniferum HOM05D001101 ORTHO05D000893 1.1e-15 88.2 221 34.4
Zm00001eb239070 Zea mays HOM05D001101 ORTHO05D000893 1.4e-15 87.8 264 34.1
Sed0027959 Sechium edule HOM05D001101 ORTHO05D000893 6.9e-15 85.5 213 36.6
HanXRQChr04g0108531 Helianthus annuus HOM05D001101 ORTHO05D000893 1.2e-14 84.7 207 39.1
PSO541G3246 Papaver somniferum HOM05D001101 ORTHO05D000893 1.2e-14 84.7 221 33.0
Lsat_1_v5_gn_7_102241 Lactuca sativa HOM05D001101 ORTHO05D000893 4.5e-14 82.8 123 48.0
Actinidia35207 Actinidia chinensis HOM05D001101 ORTHO05D000893 1.7e-13 80.9 234 32.9
PGR031G1547 Punica granatum HOM05D001101 ORTHO05D000893 1.7e-13 80.9 227 36.1
A01p38980 Brassica napus HOM05D001101 ORTHO05D000893 4.7e-11 72.8 148 43.9
BraA01t03944Z Brassica rapa HOM05D001101 ORTHO05D000893 4.7e-11 72.8 148 43.9
HPP92_020070 Vanilla planifolia HOM05D001101 ORTHO05D003060 6.7e-10 68.9 195 35.9
Phvul.011G166300 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 8.8e-10 68.6 117 37.6
BcaC09g48454 Brassica carinata HOM05D001101 ORTHO05D000893 3.3e-09 66.6 152 41.4
BolC1t04914H Brassica oleracea HOM05D001101 ORTHO05D000893 3.7e-08 63.2 139 41.0
C01p49590 Brassica napus HOM05D001101 ORTHO05D000893 4.8e-08 62.8 139 41.0
ATR0012G063 Amborella trichopoda HOM05D001101 ORTHO05D000893 3.1e-07 60.1 166 33.1


User provided reference genes

Program Settings