Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g054220 Medicago truncatula HOM05D000855 ORTHO05D002321 3.8e-108 394.8 194 100.0
Medtr8g054290 Medicago truncatula HOM05D000855 ORTHO05D002321 1.0e-52 210.7 110 94.5
Medtr8g054270 Medicago truncatula HOM05D000855 ORTHO05D002321 1.4e-46 190.3 118 78.8
Medtr8g080970 Medicago truncatula HOM05D000855 ORTHO05D002321 5.4e-38 161.8 109 76.1
Medtr1g066890 Medicago truncatula HOM05D000855 ORTHO05D002321 2.5e-27 126.3 134 53.7
Ca_11449_v3 Cicer arietinum L. HOM05D000855 ORTHO05D002321 2.0e-24 116.7 126 56.3
Medtr2g104120 Medicago truncatula HOM05D000855 ORTHO05D002321 2.9e-23 112.8 134 49.3
TPR.G30257 Trifolium pratense HOM05D000855 ORTHO05D002321 2.9e-23 112.8 134 50.7
Glyma.13G137000 Glycine max HOM05D000855 ORTHO05D002321 2.4e-22 109.8 88 67.0
VMungo0720G0832 Vigna mungo HOM05D000855 ORTHO05D002321 1.2e-21 107.5 87 66.7
Glyma.10G049300 Glycine max HOM05D000855 ORTHO05D002321 2.7e-21 106.3 98 63.3
Lj5g0028198 Lotus japonicus HOM05D000855 ORTHO05D002321 6.0e-21 105.1 101 61.4
Psat6g070600 Pisum sativum HOM05D000855 ORTHO05D002321 1.3e-20 104.0 104 54.8
Phvul.007G163600 Phaseolus vulgaris HOM05D000855 ORTHO05D002321 8.6e-20 101.3 89 64.0
TPR.G30256 Trifolium pratense HOM05D000855 ORTHO05D002321 1.9e-19 100.1 118 52.5
Lalb_Chr21g0314651 Lupinus albus HOM05D000855 ORTHO05D002321 1.2e-18 97.4 126 46.8
Psat2g055760 Pisum sativum HOM05D000855 ORTHO05D002321 3.6e-18 95.9 93 55.9
Medtr8g035700 Medicago truncatula HOM05D000855 ORTHO05D002321 3.1e-17 92.8 54 83.3
EL10Ac7g17350 Beta vulgaris HOM05D000855 ORTHO05D002321 7.6e-16 88.2 127 41.7
Hund20160 Selenicereus undatus HOM05D000855 ORTHO05D002321 2.2e-15 86.7 116 45.7
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 2.9e-15 86.3 129 40.3
Hma1.2p1_0111F.1_g053880 Hydrangea macrophylla HOM05D000855 ORTHO05D002321 2.9e-15 86.3 94 51.1
Ah.15g092080 Amaranthus hybridus HOM05D000855 ORTHO05D000193 4.9e-15 85.5 99 49.5
AUR62040020 Chenopodium quinoa HOM05D000855 ORTHO05D002321 2.4e-14 83.2 100 49.0
AUR62044639 Chenopodium quinoa HOM05D000855 ORTHO05D002321 2.4e-14 83.2 100 49.0
Lj3C979T7 Lonicera japonica HOM05D000855 ORTHO05D002321 4.2e-14 82.4 103 42.7
TWI77G0883 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 4.2e-14 82.4 110 44.5
Haze_20651 Corylus avellana HOM05D000855 ORTHO05D002321 1.2e-13 80.9 90 50.0
AUR62039783 Chenopodium quinoa HOM05D000855 ORTHO05D002321 1.6e-13 80.5 110 45.5
FvH4_6g15320 Fragaria vesca HOM05D000855 ORTHO05D002321 1.6e-13 80.5 90 50.0
FAN05G0228 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.6e-13 80.5 90 50.0
FAN05G3912 Fragaria x ananassa HOM05D000855 ORTHO05D017897 1.6e-13 80.5 90 50.0
FAN14G3376 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.6e-13 80.5 90 50.0
MBI14_g26603_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D002321 1.6e-13 80.5 87 50.6
TAR623G1395 Trochodendron aralioides HOM05D000855 ORTHO05D002321 1.6e-13 80.5 88 52.3
Manes.08G003300 Manihot esculenta HOM05D000855 ORTHO05D002321 2.7e-13 79.7 88 50.0
Prupe.6G241400 Prunus persica HOM05D000855 ORTHO05D002321 2.7e-13 79.7 125 40.8
TWI74G1097 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 4.6e-13 79.0 99 44.4
RcHm_v2.0_Chr3g0468791 Rosa chinensis HOM05D000855 ORTHO05D002321 6.0e-13 78.6 90 48.9
FAN09G3879 Fragaria x ananassa HOM05D000855 ORTHO05D002321 7.8e-13 78.2 90 48.9
vmacro20062 Vaccinium macrocarpon HOM05D000855 ORTHO05D002321 1.7e-12 77.0 88 47.7
Aqoxy4G03191 Aquilegia oxysepala HOM05D000855 ORTHO05D002321 3.0e-12 76.3 102 44.1
QL07p045288 Quercus lobata HOM05D000855 ORTHO05D002321 3.0e-12 76.3 93 45.2
RhsimUnG0118400 Rhododendron simsii HOM05D000855 ORTHO05D002321 3.0e-12 76.3 88 47.7
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 3.9e-12 75.9 112 41.1
SGA_v2.0_scaffold94G28666 Striga asiatica HOM05D000855 ORTHO05D002321 3.9e-12 75.9 95 43.2
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 5.1e-12 75.5 115 41.7
ClCG07G013520 Citrullus lanatus HOM05D000855 ORTHO05D002321 6.6e-12 75.1 80 51.2
Sed0017477 Sechium edule HOM05D000855 ORTHO05D002321 6.6e-12 75.1 80 50.0
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 8.7e-12 74.7 118 40.7
PGSC0003DMG400036874 Solanum tuberosum HOM05D000855 ORTHO05D002321 8.7e-12 74.7 118 42.4
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 8.7e-12 74.7 98 43.9
CiPaw.09G180000 Carya illinoinensis HOM05D000855 ORTHO05D002321 1.1e-11 74.3 91 50.5
MELO3C013022.2 Cucumis melo HOM05D000855 ORTHO05D002321 1.5e-11 73.9 80 50.0
Oeu035143.1 Olea europaea HOM05D000855 ORTHO05D002321 1.5e-11 73.9 92 44.6
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.5e-11 73.9 118 42.4
COL.COLO4_27083 Corchorus olitorius HOM05D000855 ORTHO05D002321 2.5e-11 73.2 87 47.1
HanXRQChr14g0454651 Helianthus annuus HOM05D000855 ORTHO05D002321 3.3e-11 72.8 94 42.6
Atru.chr8.2555 Acer truncatum HOM05D000855 ORTHO05D002321 4.3e-11 72.4 88 48.9
Actinidia04696 Actinidia chinensis HOM05D000855 ORTHO05D002321 4.3e-11 72.4 86 45.3
Actinidia19715 Actinidia chinensis HOM05D000855 ORTHO05D002321 4.3e-11 72.4 86 45.3
DCAR_014961 Daucus carota HOM05D000855 ORTHO05D002321 4.3e-11 72.4 97 43.3
Potri.006G131800 Populus trichocarpa HOM05D000855 ORTHO05D002321 4.3e-11 72.4 77 50.6
CsaV3_3G044140 Cucumis sativus L. HOM05D000855 ORTHO05D002321 5.6e-11 72.0 80 48.8
Duzib093G2126 Durio zibethinus HOM05D000855 ORTHO05D002321 5.6e-11 72.0 103 38.8
CSS0000157 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D002321 7.3e-11 71.6 88 44.3
Lsat_1_v5_gn_2_109641 Lactuca sativa HOM05D000855 ORTHO05D002321 7.3e-11 71.6 115 37.4
Sabra06G0103400 Salix brachista HOM05D000855 ORTHO05D002321 7.3e-11 71.6 77 49.4
PSO210G7506 Papaver somniferum HOM05D000855 ORTHO05D002321 1.3e-10 70.9 96 44.8
Zm00001eb351570 Zea mays HOM05D000855 ORTHO05D002321 1.3e-10 70.9 83 47.0
Gorai.002G250400 Gossypium raimondii HOM05D000855 ORTHO05D002321 1.6e-10 70.5 94 44.7
PSO210G3519 Papaver somniferum HOM05D000855 ORTHO05D002321 1.6e-10 70.5 92 43.5
Eucgr.K03210 Eucalyptus grandis HOM05D000855 ORTHO05D002321 2.8e-10 69.7 76 47.4
Gohir.A01G217300 Gossypium hirsutum HOM05D000855 ORTHO05D002321 2.8e-10 69.7 94 44.7
THA.LOC104826984 Tarenaya hassleriana HOM05D000855 ORTHO05D002321 2.8e-10 69.7 84 46.4
TAR636G1494 Trochodendron aralioides HOM05D000855 ORTHO05D002321 2.8e-10 69.7 86 48.8
Zm00001eb289850 Zea mays HOM05D000855 ORTHO05D002321 2.8e-10 69.7 87 44.8
Oeu026843.1 Olea europaea HOM05D000855 ORTHO05D002321 3.6e-10 69.3 105 40.0
Sopen09g002220 Solanum pennellii HOM05D000855 ORTHO05D002321 3.6e-10 69.3 114 38.6
Oeu060084.1 Olea europaea HOM05D000855 ORTHO05D002321 4.8e-10 68.9 98 42.9
Ciclev10010946m.g Citrus clementina HOM05D000855 ORTHO05D002321 6.2e-10 68.6 90 44.4
TAR633G0412 Trochodendron aralioides HOM05D000855 ORTHO05D002321 6.2e-10 68.6 88 45.5
CAN.G608.13 Capsicum annuum HOM05D000855 ORTHO05D002321 8.1e-10 68.2 118 39.0
Cpa.g.sc114.40 Carica papaya HOM05D000855 ORTHO05D002321 1.1e-09 67.8 103 39.8
Lsat_1_v5_gn_6_29660 Lactuca sativa HOM05D000855 ORTHO05D002321 1.4e-09 67.4 83 45.8
ATR1159G033 Amborella trichopoda HOM05D000855 ORTHO05D002321 3.1e-09 66.2 81 49.4
Gohir.D01G206000 Gossypium hirsutum HOM05D000855 ORTHO05D002321 3.1e-09 66.2 78 46.2
Thecc.05G053800 Theobroma cacao HOM05D000855 ORTHO05D002321 3.1e-09 66.2 79 46.8
C02p00720 Brassica napus HOM05D000855 ORTHO05D002321 4.0e-09 65.9 114 37.7
BolC2t06070H Brassica oleracea HOM05D000855 ORTHO05D002321 4.0e-09 65.9 114 37.7
PSO339G4758 Papaver somniferum HOM05D000855 ORTHO05D002321 1.5e-08 63.9 85 44.7
PSO384G0136 Papaver somniferum HOM05D000855 ORTHO05D002321 1.5e-08 63.9 85 44.7
Dinv31338 Davidia involucrata HOM05D000855 ORTHO05D002321 2.0e-08 63.5 81 45.7
MD12G1124400 Malus domestica HOM05D000855 ORTHO05D002321 2.0e-08 63.5 86 45.3
Migut.L01658 Erythranthe guttata HOM05D000855 ORTHO05D002321 2.6e-08 63.2 77 42.9
AL6G12240 Arabidopsis lyrata HOM05D000855 ORTHO05D002321 4.5e-08 62.4 106 36.8
Sc07g0006250 Simmondsia chinensis HOM05D000855 ORTHO05D002321 4.5e-08 62.4 81 43.2
Lj5g0013876 Lotus japonicus HOM05D000855 ORTHO05D002321 5.8e-08 62.0 83 44.6
ECA238G1586 Erigeron canadensis HOM05D000855 ORTHO05D002321 7.6e-08 61.6 102 37.3
BraA02t04737Z Brassica rapa HOM05D000855 ORTHO05D002321 1.3e-07 60.8 86 43.0
CARHR210340 Cardamine hirsuta HOM05D000855 ORTHO05D002321 1.3e-07 60.8 90 40.0
AT5G02950 Arabidopsis thaliana HOM05D000855 ORTHO05D002321 1.7e-07 60.5 87 42.5
BcaB05g21858 Brassica carinata HOM05D002909 ORTHO05D000493 1.7e-07 60.5 86 41.9
BcaB05g21860 Brassica carinata HOM05D000855 ORTHO05D002321 1.7e-07 60.5 86 41.9
Carub.0006s0175 Capsella rubella HOM05D000855 ORTHO05D002321 1.7e-07 60.5 90 38.9
AUR62010520 Chenopodium quinoa HOM05D000855 ORTHO05D002321 1.7e-07 60.5 80 45.0
Glyma.20G198402 Glycine max HOM05D000855 ORTHO05D002321 1.7e-07 60.5 92 42.4
EL10Ac5g12631 Beta vulgaris HOM05D000855 ORTHO05D002321 2.2e-07 60.1 83 44.6
unitig_0.g692 Utricularia gibba HOM05D000855 ORTHO05D002321 2.2e-07 60.1 65 43.1
Aqoxy1G01590 Aquilegia oxysepala HOM05D000855 ORTHO05D002321 2.9e-07 59.7 78 41.0
Glyma.10G192100 Glycine max HOM05D000855 ORTHO05D002321 2.9e-07 59.7 104 37.5
Haze_16938 Corylus avellana HOM05D000855 ORTHO05D002321 3.8e-07 59.3 83 42.2
CSS0010994 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D002321 4.9e-07 58.9 80 42.5
Cfa001590 Carpinus fangiana HOM05D000855 ORTHO05D002321 4.9e-07 58.9 83 42.2
DCAR_006467 Daucus carota HOM05D000855 ORTHO05D002321 4.9e-07 58.9 88 38.6
MD07G1179800 Malus domestica HOM05D000855 ORTHO05D002321 4.9e-07 58.9 83 41.0
Dinv31342 Davidia involucrata HOM05D000855 ORTHO05D002321 8.4e-07 58.2 78 44.9
MD01G1112200 Malus domestica HOM05D000855 ORTHO05D002321 8.4e-07 58.2 83 41.0
BcaC03g13040 Brassica carinata HOM05D000855 ORTHO05D002321 1.1e-06 57.8 99 38.4
Actinidia03026 Actinidia chinensis HOM05D000855 ORTHO05D002321 1.4e-06 57.4 80 41.2
Prupe.2G219200 Prunus persica HOM05D000855 ORTHO05D002321 1.4e-06 57.4 79 43.0
Thecc.10G067400 Theobroma cacao HOM05D000855 ORTHO05D002321 1.4e-06 57.4 72 45.8
AUR62017379 Chenopodium quinoa HOM05D000855 ORTHO05D002321 1.9e-06 57.0 89 40.4
DCAR_006466 Daucus carota HOM05D000855 ORTHO05D002321 1.9e-06 57.0 83 37.3
FAN01G0071 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.9e-06 57.0 83 38.6
FAN03G2424 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.9e-06 57.0 83 38.6
Psat6g049760 Pisum sativum HOM05D000855 ORTHO05D002321 1.9e-06 57.0 93 39.8
THA.LOC104824224 Tarenaya hassleriana HOM05D000855 ORTHO05D002321 1.9e-06 57.0 88 38.6
Zm00001eb112020 Zea mays HOM05D000855 ORTHO05D002321 1.9e-06 57.0 84 35.7
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 2.4e-06 56.6 81 43.2
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 2.4e-06 56.6 81 43.2
Ca_09783_v3 Cicer arietinum L. HOM05D000855 ORTHO05D002321 2.4e-06 56.6 83 43.4
Lj6g0011965 Lotus japonicus HOM05D000855 ORTHO05D002321 2.4e-06 56.6 83 42.2
Medtr2g047912 Medicago truncatula HOM05D000855 ORTHO05D002321 2.4e-06 56.6 83 43.4
Cpa.g.sc53.36 Carica papaya HOM05D000855 ORTHO05D002321 3.2e-06 56.2 88 38.6
Ciclev10030525m.g Citrus clementina HOM05D000855 ORTHO05D002321 3.2e-06 56.2 79 39.2
Duzib114G0150 Durio zibethinus HOM05D000855 ORTHO05D002321 3.2e-06 56.2 72 44.4
Actinidia38246 Actinidia chinensis HOM05D000855 ORTHO05D002321 4.2e-06 55.8 80 41.2
Ca_27423_v3 Cicer arietinum L. HOM05D000855 ORTHO05D002321 4.2e-06 55.8 83 42.2
Os07g0694500 Oryza sativa ssp. japonica HOM05D000855 ORTHO05D002321 4.2e-06 55.8 75 40.0
Ah.12g058150 Amaranthus hybridus HOM05D000855 ORTHO05D002321 5.4e-06 55.5 80 41.2
ClCG02G013880 Citrullus lanatus HOM05D000855 ORTHO05D002321 5.4e-06 55.5 81 40.7
MELO3C011728.2 Cucumis melo HOM05D000855 ORTHO05D002321 5.4e-06 55.5 81 40.7
CsaV3_5G006280 Cucumis sativus L. HOM05D000855 ORTHO05D002321 5.4e-06 55.5 81 40.7
Lalb_Chr03g0036491 Lupinus albus HOM05D000855 ORTHO05D002321 5.4e-06 55.5 83 42.2
Medtr1g072780 Medicago truncatula HOM05D000855 ORTHO05D002321 5.4e-06 55.5 83 42.2
Eucgr.G02799 Eucalyptus grandis HOM05D000855 ORTHO05D002321 7.1e-06 55.1 104 37.5
TPR.G18567 Trifolium pratense HOM05D000855 ORTHO05D002321 7.1e-06 55.1 81 43.2
SGA_v2.0_scaffold62G21451 Striga asiatica HOM05D000855 ORTHO05D002321 9.3e-06 54.7 79 36.7
THA.LOC104825235 Tarenaya hassleriana HOM05D000855 ORTHO05D002321 9.3e-06 54.7 88 37.5
Thecc.02G021700 Theobroma cacao HOM05D000855 ORTHO05D002321 9.3e-06 54.7 72 45.8


User provided reference genes

Program Settings