Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 4.3e-259 897.5 463 100.0
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 3.4e-208 728.4 471 80.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 6.5e-183 644.4 463 73.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 4.4e-179 631.7 473 70.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.8e-178 629.0 468 70.9
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.1e-177 625.5 471 69.4
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 6.4e-170 601.3 471 66.9
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 9.5e-166 587.4 473 65.5
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.6e-160 570.1 344 82.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.5e-158 563.5 478 62.8
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.1e-153 547.4 369 78.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.1e-145 520.8 476 60.1
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.9e-145 520.0 475 60.2
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.1e-144 516.5 478 60.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.3e-143 513.8 475 59.4
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.6e-142 508.4 474 60.5
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.8e-140 501.5 477 60.4
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.5e-139 500.4 465 58.5
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.2e-138 496.5 471 57.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 3.5e-136 489.2 470 59.1
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.3e-135 486.5 485 58.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.5e-134 483.8 471 57.5
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.9e-134 483.4 485 58.4
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 2.8e-133 479.6 473 57.3
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.6e-133 479.2 465 58.3
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.8e-133 478.8 474 58.9
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 8.1e-133 478.0 460 57.2
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.4e-132 477.2 470 57.0
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.4e-132 477.2 478 58.4
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-131 473.8 470 58.7
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.6e-131 473.0 473 57.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 5.8e-131 471.9 473 56.9
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.7e-130 470.3 462 57.4
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.2e-130 469.9 470 57.7
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 3.8e-130 469.2 473 56.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.9e-130 468.8 475 56.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.9e-129 466.8 469 56.9
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.9e-129 466.8 469 56.7
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.4e-129 466.5 471 56.3
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.4e-129 466.5 471 56.3
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.2e-129 466.1 474 57.4
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.1e-129 464.9 469 55.7
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.7e-128 463.0 474 55.9
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.7e-128 463.0 477 56.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.6e-128 462.2 600 48.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.0e-128 461.8 469 56.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.3e-127 460.7 475 56.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.1e-127 458.8 469 55.9
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.8e-125 452.2 466 55.6
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.8e-125 452.2 483 54.0
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 5.3e-124 448.7 465 55.1
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 9.0e-124 448.0 467 55.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.9e-121 440.3 483 54.9
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.4e-121 439.9 468 53.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.1e-121 438.3 468 53.6
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.0e-120 435.3 468 53.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 6.0e-120 435.3 465 53.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.0e-119 434.5 483 53.2
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.9e-119 432.6 478 54.2
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.5e-118 430.6 471 53.9
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 4.8e-117 425.6 467 52.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.1e-117 424.9 465 52.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.1e-116 422.9 467 52.9
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 7.6e-115 418.3 470 53.0
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 5.5e-113 412.1 465 51.4
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.2e-112 411.0 471 50.5
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.7e-112 409.8 509 49.5
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.5e-112 409.5 536 48.7
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.3e-111 407.5 466 51.7
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 4.3e-110 402.5 468 53.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.3e-109 401.0 470 50.4
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.3e-109 401.0 477 49.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.1e-109 400.2 468 50.4
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.8e-109 399.8 504 48.2
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 3.7e-109 399.4 396 55.3
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.8e-109 399.1 430 54.4
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-106 390.6 479 50.3
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.9e-106 389.8 469 49.5
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.1e-105 387.9 467 49.5
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.4e-105 387.5 469 49.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.5e-105 386.7 475 49.3
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.5e-105 386.7 478 49.2
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.5e-105 386.7 483 49.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 3.2e-105 386.3 465 50.1
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.2e-105 386.3 480 48.8
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.2e-105 386.0 475 49.7
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 9.3e-105 384.8 473 49.5
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.6e-104 384.0 471 49.5
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.1e-104 383.6 474 49.6
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.1e-104 383.6 480 50.2
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.7e-104 383.3 409 53.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.6e-104 382.5 478 49.6
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.8e-103 380.6 477 47.8
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 6.7e-103 378.6 475 48.0
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.7e-103 378.3 473 48.8
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.7e-103 378.3 473 48.8
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.3e-102 376.3 477 47.4
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.7e-102 375.6 473 49.0
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.6e-101 374.0 474 47.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.7e-101 372.9 489 47.4
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.7e-101 372.9 476 47.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.8e-100 370.5 494 46.2
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.4e-100 370.2 461 49.7
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 9.0e-100 368.2 528 45.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.5e-99 367.5 466 48.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.0e-99 367.1 464 48.9
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.9e-99 365.5 467 47.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.7e-98 364.0 478 47.9
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-98 364.0 459 46.4
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.9e-98 363.2 477 49.7
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 3.8e-98 362.8 455 47.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 5.0e-98 362.5 463 47.7
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.2e-97 359.4 468 46.2
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.2e-97 358.6 478 46.2
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-96 357.8 468 46.6
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.1e-95 352.4 461 47.1
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.5e-94 350.9 472 46.6
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 5.3e-92 342.4 464 45.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-91 341.3 477 45.1
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.9e-91 339.0 404 50.5
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 7.7e-91 338.6 469 45.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.3e-90 337.8 369 53.1
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-89 334.7 278 62.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.5e-89 332.4 442 45.0
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.1e-88 330.5 304 56.9
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 3.0e-87 326.6 476 43.9
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 8.8e-87 325.1 468 43.8
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.4e-84 317.8 387 45.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 4.1e-84 316.2 370 47.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 8.0e-80 302.0 371 45.6
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.0e-79 299.7 312 51.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.5e-78 297.7 434 43.5
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-78 297.7 454 44.3
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 9.1e-76 288.5 377 45.1
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 3.5e-75 286.6 385 45.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.2e-74 283.9 482 41.3
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 4.2e-73 279.6 358 45.0
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.6e-72 276.6 328 49.1
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.1e-72 275.8 342 48.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 4.4e-70 269.6 239 58.6
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-69 267.3 212 64.6
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.0e-67 260.8 381 45.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.5e-67 260.0 309 45.0
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-66 258.5 309 45.0
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 7.2e-65 252.3 360 40.6
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.0e-63 246.9 306 45.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 5.2e-63 246.1 377 42.4
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 2.0e-62 244.2 390 41.5
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.2e-61 240.7 366 40.2
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 3.8e-58 229.9 144 74.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.3e-57 225.7 292 41.4
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 9.8e-54 215.3 346 41.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.3e-53 214.9 356 40.2
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.7e-53 213.4 371 36.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 4.1e-52 209.9 283 43.8
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 7.0e-52 209.1 396 35.4
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.0e-50 205.3 319 39.5
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.2e-48 198.4 466 33.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.8e-48 197.2 325 38.5
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 4.7e-48 196.4 197 52.3
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.7e-45 188.0 201 50.2
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 8.3e-45 185.7 255 44.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.4e-44 183.0 204 48.5
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 8.9e-39 165.6 102 76.5
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 9.2e-36 155.6 176 51.1
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-35 154.5 139 54.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 7.1e-28 129.4 107 62.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.1e-27 127.9 205 40.0
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 6.0e-27 126.3 199 41.7
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.3e-26 125.2 75 76.0
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.7e-26 124.8 82 69.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.2e-22 112.1 200 36.0
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.4e-22 110.5 191 36.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.6e-19 101.7 86 58.1
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.9e-18 97.1 127 45.7
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.5e-17 95.1 72 66.7
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 7.3e-17 92.8 63 66.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 2.7e-11 74.3 52 71.2
Medtr4g097690 Medicago truncatula HOM05D003737 ORTHO05D048953 3.5e-11 73.9 44 75.0
Medtr4g097660 Medicago truncatula HOM05D003737 ORTHO05D048953 6.0e-11 73.2 66 54.5
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 9.0e-07 59.3 34 82.4


User provided reference genes

Program Settings