Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 1.5e-26 122.1 61 100.0
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 1.6e-20 102.1 61 83.6
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 4.6e-20 100.5 56 87.5
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 1.3e-19 99.0 59 79.7
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 1.8e-19 98.6 59 81.4
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 1.8e-19 98.6 59 79.7
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 5.1e-19 97.1 61 78.7
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 1.1e-18 95.9 58 77.6
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 1.9e-18 95.1 62 80.6
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 2.5e-18 94.7 60 75.0
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 2.5e-18 94.7 61 77.0
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 7.4e-18 93.2 61 75.4
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 1.3e-17 92.4 61 73.8
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 1.6e-17 92.0 61 75.4
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 2.2e-17 91.7 59 72.9
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 3.7e-17 90.9 58 75.9
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 3.7e-17 90.9 61 72.1
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 3.7e-17 90.9 61 72.1
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 6.3e-17 90.1 55 81.8
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 6.3e-17 90.1 61 72.1
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 1.4e-16 89.0 56 73.2
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.4e-16 89.0 56 76.8
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 1.4e-16 89.0 61 72.1
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 1.8e-16 88.6 59 72.9
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 3.1e-16 87.8 61 72.1
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.1e-16 87.8 61 68.9
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.1e-16 87.8 61 68.9
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.1e-16 87.8 61 68.9
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 3.1e-16 87.8 58 72.4
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 4.1e-16 87.4 61 73.8
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 5.3e-16 87.0 51 78.4
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 5.3e-16 87.0 59 72.9
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 6.9e-16 86.7 58 72.4
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 9.0e-16 86.3 48 83.3
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 1.2e-15 85.9 61 73.8
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 2.6e-15 84.7 61 65.6
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 3.4e-15 84.3 53 77.4
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 3.4e-15 84.3 56 71.4
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 4.5e-15 84.0 57 73.7
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 7.7e-15 83.2 61 67.2
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 7.7e-15 83.2 61 63.9
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 7.7e-15 83.2 51 72.5
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 7.7e-15 83.2 51 72.5
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 1.0e-14 82.8 60 61.7
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 1.3e-14 82.4 61 72.1
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 1.3e-14 82.4 51 70.6
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 1.3e-14 82.4 51 70.6
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.3e-14 82.4 51 70.6
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 1.3e-14 82.4 63 63.5
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 1.7e-14 82.0 61 63.9
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 1.7e-14 82.0 57 64.9
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 2.9e-14 81.3 61 62.3
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 6.5e-14 80.1 51 68.6
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 1.1e-13 79.3 59 61.0
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 1.4e-13 79.0 60 60.0
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 2.5e-13 78.2 63 60.3
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 3.2e-13 77.8 51 70.6
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 3.2e-13 77.8 59 66.1
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 4.2e-13 77.4 61 65.6
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 5.5e-13 77.0 61 65.6
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 2.1e-12 75.1 59 61.0
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 4.6e-12 73.9 58 60.3
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 4.6e-12 73.9 58 60.3
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 6.1e-12 73.6 57 57.9
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 6.1e-12 73.6 58 62.1
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 6.1e-12 73.6 61 59.0
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 7.9e-12 73.2 43 76.7
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 7.9e-12 73.2 42 83.3
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.4e-11 72.4 46 67.4
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.4e-11 72.4 46 67.4
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 1.8e-11 72.0 61 55.7
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 1.8e-11 72.0 46 67.4
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 3.0e-11 71.2 46 67.4
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 3.0e-11 71.2 55 63.6
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 1.1e-10 69.3 49 71.4
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 2.0e-10 68.6 52 65.4
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 3.7e-09 64.3 64 60.9
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 8.2e-09 63.2 43 65.1
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 3.1e-08 61.2 40 67.5
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 4.1e-08 60.8 36 77.8
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 2.0e-07 58.5 55 49.1


User provided reference genes

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