Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 3.6e-83 312.0 217 100.0
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 5.4e-71 271.6 217 78.8
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 4.7e-67 258.5 219 78.5
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 1.1e-55 220.7 219 61.6
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 9.3e-55 217.6 218 62.4
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.3e-53 213.8 218 63.8
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 1.1e-50 204.1 218 63.8
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 3.1e-50 202.6 221 61.1
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 2.8e-35 152.9 189 49.2
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.8e-29 133.7 218 40.4
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 2.3e-29 133.3 195 47.2
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 3.0e-29 132.9 218 39.9
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 5.1e-29 132.1 218 39.9
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 1.9e-28 130.2 224 40.6
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 3.3e-28 129.4 217 41.0
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 7.4e-28 128.3 219 41.1
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.6e-27 127.1 219 40.6
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 2.1e-27 126.7 221 40.7
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 2.8e-27 126.3 217 39.2
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 1.1e-26 124.4 219 45.2
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 1.4e-26 124.0 128 54.7
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 3.1e-26 122.9 219 40.6
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 3.1e-26 122.9 219 40.6
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 3.1e-26 122.9 171 59.1
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 1.2e-25 120.9 226 38.5
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 1.2e-25 120.9 221 40.3
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 2.0e-25 120.2 219 37.9
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 2.0e-25 120.2 217 38.7
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 6.5e-24 115.2 218 38.1
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 8.5e-24 114.8 191 38.7
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 1.1e-23 114.4 224 37.1
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 1.9e-23 113.6 189 41.8
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 2.5e-23 113.2 226 37.2
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 1.6e-22 110.5 221 46.6
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 7.9e-22 108.2 217 36.4
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 1.3e-21 107.5 220 37.7
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.8e-21 107.1 219 38.8
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 2.3e-21 106.7 229 35.8
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 3.9e-21 105.9 192 39.1
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 6.7e-21 105.1 120 50.0
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 6.7e-21 105.1 218 33.9
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 1.1e-20 104.4 218 34.9
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 1.5e-20 104.0 218 33.0
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 3.3e-20 102.8 217 37.3
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 3.3e-20 102.8 227 36.1
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 5.7e-20 102.1 218 34.4
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 1.6e-19 100.5 244 35.2
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 4.8e-19 99.0 218 36.2
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 6.3e-19 98.6 104 49.0
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 1.1e-18 97.8 116 53.4
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 1.8e-18 97.1 149 46.3
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 2.4e-18 96.7 192 38.0
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 4.1e-18 95.9 191 37.7
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 5.3e-18 95.5 116 52.6
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 5.3e-18 95.5 128 50.0
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 2.6e-17 93.2 224 33.0
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 7.7e-17 91.7 229 32.8
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 7.7e-17 91.7 222 36.0
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 3.8e-16 89.4 229 31.9
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 6.5e-16 88.6 118 47.5
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 8.5e-16 88.2 217 32.7
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 1.1e-15 87.8 220 32.7
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 1.9e-15 87.0 217 32.3
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 3.2e-15 86.3 217 32.3
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 4.2e-15 85.9 226 32.7
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 7.2e-15 85.1 122 45.1
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 9.4e-15 84.7 217 32.3
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 1.2e-14 84.3 226 33.2
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 1.2e-14 84.3 227 33.5
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 1.2e-14 84.3 220 35.0
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 2.1e-14 83.6 227 33.0
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 3.0e-13 79.7 219 38.4
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 3.0e-13 79.7 221 31.7
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 3.9e-13 79.3 131 42.0
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 8.8e-13 78.2 92 47.8
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 8.8e-13 78.2 182 32.4
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.5e-12 77.4 190 33.2
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 5.7e-12 75.5 76 52.6
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 5.7e-12 75.5 69 55.1
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 7.4e-12 75.1 89 48.3
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 7.4e-12 75.1 90 46.7
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 7.4e-12 75.1 190 32.6
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 1.7e-11 73.9 124 39.5
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 2.2e-11 73.6 194 31.4
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 3.7e-11 72.8 189 32.3
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 4.8e-11 72.4 67 56.7
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 6.3e-11 72.0 183 31.7
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.4e-10 70.9 185 33.0
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 1.4e-10 70.9 187 30.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 2.4e-10 70.1 101 41.6
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 3.4e-09 66.2 89 47.2
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 7.7e-09 65.1 73 47.9
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 1.4e-07 60.8 124 40.3
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 4.2e-07 59.3 173 30.6
Pp3c4_18190 Physcomitrium patens HOM05D035914 ORTHO05D010468 1.6e-06 57.4 46 56.5


User provided reference genes

Program Settings