Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 4.0e-122 441.4 219 100.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 7.5e-105 384.0 189 98.9
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 7.5e-105 384.0 193 96.9
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 2.9e-104 382.1 189 97.9
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 3.7e-104 381.7 189 97.9
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 6.4e-104 380.9 189 97.9
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.4e-103 379.8 189 96.8
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 7.1e-103 377.5 189 96.3
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 7.1e-103 377.5 189 96.3
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 7.1e-103 377.5 189 96.3
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 7.1e-103 377.5 189 97.4
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 2.1e-102 375.9 191 94.2
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 2.1e-102 375.9 189 95.8
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.7e-102 375.6 189 95.2
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.5e-102 375.2 189 95.8
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.5e-102 375.2 189 95.8
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.5e-102 375.2 189 95.8
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 6.0e-102 374.4 189 94.7
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 7.8e-102 374.0 188 95.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.0e-101 373.6 189 94.7
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.3e-101 373.2 189 95.2
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.3e-101 373.2 189 94.2
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.3e-101 373.2 189 95.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.7e-101 372.9 189 93.7
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.7e-101 372.9 189 94.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 2.3e-101 372.5 189 93.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 3.0e-101 372.1 189 94.2
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 5.1e-101 371.3 189 93.1
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 5.1e-101 371.3 189 93.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 6.6e-101 370.9 189 94.2
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.1e-100 370.2 189 93.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.9e-100 369.4 189 93.7
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.9e-100 369.4 189 93.7
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.9e-100 369.4 189 93.7
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.9e-100 369.4 189 93.7
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.9e-100 369.4 189 94.7
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.5e-100 369.0 189 93.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 4.3e-100 368.2 188 92.6
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 5.6e-100 367.9 189 93.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 5.6e-100 367.9 188 93.1
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 5.6e-100 367.9 188 94.1
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 7.3e-100 367.5 189 92.1
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 7.3e-100 367.5 189 93.7
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.2e-99 366.7 189 93.1
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.6e-99 365.2 188 92.0
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 3.6e-99 365.2 189 94.2
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 4.7e-99 364.8 190 91.6
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 4.7e-99 364.8 189 90.5
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 8.1e-99 364.0 210 86.2
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 8.1e-99 364.0 189 92.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 8.1e-99 364.0 189 92.1
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 8.1e-99 364.0 189 91.0
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.4e-98 363.2 189 93.7
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.4e-98 363.2 204 86.8
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.8e-98 362.8 189 91.0
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.8e-98 362.8 195 91.3
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 2.3e-98 362.5 189 91.0
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 2.3e-98 362.5 189 92.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 4.0e-98 361.7 189 91.0
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 4.0e-98 361.7 189 92.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 5.2e-98 361.3 189 91.0
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 6.8e-98 360.9 188 91.5
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 8.9e-98 360.5 189 92.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.2e-97 360.1 216 82.4
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.5e-97 359.8 189 91.5
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.5e-97 359.8 189 89.9
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 5.8e-97 357.8 190 89.5
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 9.9e-97 357.1 189 88.4
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 9.9e-97 357.1 189 88.9
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.3e-96 356.7 188 90.4
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 2.2e-96 355.9 201 87.1
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 2.2e-96 355.9 188 89.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 2.9e-96 355.5 193 87.6
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.9e-96 355.5 188 92.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 3.7e-96 355.1 189 87.8
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 6.4e-96 354.4 196 87.8
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 6.4e-96 354.4 189 88.9
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 8.4e-96 354.0 230 78.7
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 3.2e-95 352.1 201 86.1
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.2e-95 352.1 189 87.3
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 5.4e-95 351.3 216 80.6
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 7.1e-95 350.9 189 86.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 2.7e-94 349.0 183 91.3
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.5e-94 348.6 189 85.2
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 6.0e-94 347.8 189 85.7
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.3e-93 346.7 188 85.6
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.3e-93 346.7 193 87.6
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.7e-93 346.3 189 84.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.7e-93 346.3 188 85.6
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.3e-93 345.9 189 85.2
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.9e-93 345.1 188 85.1
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 5.1e-93 344.7 188 85.1
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 6.6e-93 344.4 188 84.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.5e-92 342.4 189 84.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 4.3e-92 341.7 188 85.1
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.7e-91 338.2 193 80.8
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 6.8e-90 334.3 189 80.4
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.2e-89 333.6 189 81.0
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.0e-89 332.8 181 89.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.0e-89 332.8 181 89.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 5.8e-89 331.3 189 79.9
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.7e-88 329.7 171 91.2
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.9e-88 328.9 171 90.1
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 3.2e-87 325.5 167 95.2
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 9.3e-87 323.9 189 77.8
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 6.0e-86 321.2 189 80.4
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.1e-84 317.0 188 76.1
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.5e-84 316.6 160 93.8
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-84 316.2 188 76.6
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.8e-82 309.7 160 91.2
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 2.2e-80 302.8 161 91.9
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.4e-79 300.1 160 88.8
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 9.0e-74 280.8 171 80.7
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.7e-72 276.6 209 67.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.4e-66 256.9 188 66.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 3.4e-65 252.3 140 87.1
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.1e-61 238.4 188 61.7
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-59 233.8 183 61.2
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 7.6e-57 224.6 131 86.3
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-56 223.8 206 52.4
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.4e-55 220.3 112 91.1
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.2e-55 219.2 149 71.8
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 4.6e-54 215.3 109 96.3
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 5.7e-52 208.4 158 66.5
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.2e-51 206.5 112 86.6
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.8e-51 206.1 109 91.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.4e-50 203.8 112 88.4
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 5.3e-50 201.8 106 84.9
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.2e-40 169.9 80 97.5
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.8e-40 169.1 80 96.2
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.6e-38 163.7 80 92.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 4.7e-38 162.2 80 92.5
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 7.9e-38 161.4 84 94.0
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.3e-36 156.0 81 85.2
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 6.3e-35 151.8 81 91.4
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.4e-34 150.6 72 95.8
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.5e-33 146.0 155 46.5
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.5e-31 140.6 69 92.8
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 2.7e-30 136.3 87 82.8
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 6.1e-30 135.2 69 85.5
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 9.1e-26 121.3 68 79.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 4.5e-25 119.0 68 77.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 4.5e-25 119.0 68 77.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 4.1e-18 95.9 51 80.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 7.0e-18 95.1 47 89.4
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 7.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 7.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 7.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 7.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 9.8e-12 74.7 37 89.2


User provided reference genes

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