Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 6.3e-137 490.7 242 100.0
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.9e-73 279.3 241 63.9
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.9e-73 279.3 241 63.9
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 3.5e-71 272.3 238 66.4
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 6.9e-67 258.1 199 72.4
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.5e-61 240.4 211 62.6
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.4e-56 223.8 116 92.2
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-49 200.3 145 73.1
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 7.4e-45 184.9 240 48.8
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 9.7e-45 184.5 128 75.0
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 1.8e-43 180.3 145 66.9
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 1.8e-43 180.3 145 66.9
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 1.8e-43 180.3 145 66.9
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 1.8e-43 180.3 145 66.9
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 1.0e-38 164.5 196 50.0
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 5.1e-38 162.2 90 87.8
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 8.2e-36 154.8 90 83.3
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 2.9e-33 146.4 78 88.5
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 2.7e-31 139.8 87 80.5
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 2.6e-29 133.3 131 59.5
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.1e-27 127.9 98 69.4
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.1e-27 127.9 98 69.4
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.1e-27 127.9 98 69.4
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.1e-27 127.9 98 69.4
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.1e-27 127.9 98 69.4
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.8e-27 127.1 131 58.8
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 5.9e-26 122.1 88 72.7
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.0e-25 121.3 87 77.0
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 1.9e-24 117.1 65 84.6
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 4.2e-24 115.9 73 78.1
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 4.2e-24 115.9 84 76.2
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 9.4e-24 114.8 223 37.7
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 1.2e-23 114.4 65 83.1
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 6.8e-22 108.6 128 53.9
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 7.5e-21 105.1 109 56.0
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 7.5e-21 105.1 92 64.1
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 7.5e-21 105.1 170 40.0
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.7e-20 104.0 85 69.4
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 3.7e-20 102.8 81 70.4
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 8.3e-20 101.7 132 51.5
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 1.1e-19 101.3 101 57.4
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 1.1e-19 101.3 107 57.9
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.4e-19 100.9 89 61.8
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 7.0e-19 98.6 96 55.2
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.1e-19 98.2 128 50.8
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.6e-18 97.4 55 81.8
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 2.2e-17 93.6 60 78.3
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 1.9e-16 90.5 56 78.6
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 1.6e-15 87.4 143 47.6
arahy.Tifrunner.gnm1.ann1.G70FPN Arachis hypogaea HOM05D000963 ORTHO05D005131 1.4e-14 84.3 53 81.1
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.4e-14 84.3 175 38.9
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 5.2e-14 82.4 143 41.3
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 5.7e-13 79.0 72 63.9
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 3.1e-11 73.2 79 54.4
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 7.0e-11 72.0 141 39.7
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 1.2e-10 71.2 40 85.0
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 1.2e-10 71.2 40 85.0
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.6e-10 70.9 85 49.4
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 2.7e-10 70.1 56 64.3
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.9e-10 68.9 74 50.0
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 5.9e-10 68.9 34 94.1
TPR.G8529 Trifolium pratense HOM05D000060 ORTHO05D000082 5.9e-10 68.9 45 75.6
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 1.7e-09 67.4 34 91.2
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.3e-09 67.0 53 66.0
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 3.8e-09 66.2 175 33.1
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 1.1e-08 64.7 40 82.5
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.1e-08 64.7 38 78.9
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.5e-08 64.3 38 81.6
BolSC46t60969H Brassica oleracea HOM05D000963 ORTHO05D005131 1.9e-08 63.9 88 48.9
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 3.3e-08 63.2 44 70.5
EL10As15g24101 Beta vulgaris HOM05D014900 ORTHO05D018510 4.3e-08 62.8 57 57.9
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 4.3e-08 62.8 77 51.9
arahy.Tifrunner.gnm1.ann1.UXAL1K Arachis hypogaea HOM05D000963 ORTHO05D011117 5.6e-08 62.4 34 85.3
SGA_v2.0_scaffold507G52591 Striga asiatica HOM05D000963 ORTHO05D005131 5.6e-08 62.4 51 64.7
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.5e-08 61.6 34 76.5
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.2e-07 61.2 36 80.6
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.6e-07 59.7 34 73.5
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.6e-07 59.7 39 74.4
Sc08g0004380 Simmondsia chinensis HOM05D000963 ORTHO05D011117 1.0e-06 58.2 32 84.4
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.4e-06 57.8 33 78.8
BraA07t28395Z Brassica rapa HOM05D000963 ORTHO05D005131 1.8e-06 57.4 39 71.8
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 1.8e-06 57.4 30 86.7
HPP92_025570 Vanilla planifolia HOM05D000963 ORTHO05D011117 1.8e-06 57.4 33 81.8
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 2.3e-06 57.0 114 37.7
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 3.0e-06 56.6 36 69.4
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 3.0e-06 56.6 27 96.3
FAN10G3847 Fragaria x ananassa HOM05D000367 ORTHO05D001227 4.0e-06 56.2 30 86.7
Sopen09g017480 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 55.5 31 83.9
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 6.8e-06 55.5 30 83.3
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.9e-06 55.1 37 73.0


User provided reference genes

Program Settings