Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g039590 Medicago truncatula HOM05D003123 ORTHO05D003492 4.6e-52 207.6 104 100.0
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 1.9e-13 79.3 41 90.2
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 8.8e-11 70.5 40 85.0
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 1.5e-10 69.7 40 80.0
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 2.5e-10 68.9 41 80.5
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 3.3e-10 68.6 40 82.5
Lj3g0017551 Lotus japonicus HOM05D003123 ORTHO05D003492 4.3e-10 68.2 40 80.0
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 7.4e-10 67.4 40 77.5
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 7.4e-10 67.4 50 68.0
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 1.3e-09 66.6 40 80.0
Haze_09675 Corylus avellana HOM05D003123 ORTHO05D003492 1.3e-09 66.6 40 75.0
Haze_09687 Corylus avellana HOM05D003123 ORTHO05D003492 1.3e-09 66.6 40 75.0
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.7e-09 66.2 40 75.0
Haze_13900 Corylus avellana HOM05D003123 ORTHO05D003492 1.7e-09 66.2 40 75.0
RcHm_v2.0_Chr2g0120581 Rosa chinensis HOM05D003123 ORTHO05D003492 1.7e-09 66.2 38 81.6
Glyma.02G292900 Glycine max HOM05D003123 ORTHO05D003492 2.2e-09 65.9 40 75.0
Cfa020613 Carpinus fangiana HOM05D003123 ORTHO05D003492 2.8e-09 65.5 40 72.5
Lalb_Chr04g0264151 Lupinus albus HOM05D003123 ORTHO05D003492 2.8e-09 65.5 40 72.5
RcHm_v2.0_Chr2g0090581 Rosa chinensis HOM05D003123 ORTHO05D003492 2.8e-09 65.5 38 81.6
MD15G1186600 Malus domestica HOM05D003123 ORTHO05D003492 3.7e-09 65.1 56 62.5
FvH4_4g26190 Fragaria vesca HOM05D003123 ORTHO05D003492 4.8e-09 64.7 38 81.6
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 4.8e-09 64.7 38 81.6
Psat5g221680 Pisum sativum HOM05D003123 ORTHO05D003492 6.3e-09 64.3 40 75.0
Prupe.7G229900 Prunus persica HOM05D003123 ORTHO05D003492 6.3e-09 64.3 43 74.4
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 8.2e-09 63.9 38 81.6
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 8.2e-09 63.9 38 81.6
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 8.2e-09 63.9 38 81.6
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 8.2e-09 63.9 37 75.7
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 8.2e-09 63.9 38 78.9
TAR636G3586 Trochodendron aralioides HOM05D003123 ORTHO05D003492 8.2e-09 63.9 40 72.5
VMungo0647G0944 Vigna mungo HOM05D003123 ORTHO05D003492 8.2e-09 63.9 40 70.0
CSS0039589 Camellia sinensis var. sinensis HOM05D003123 ORTHO05D003492 1.4e-08 63.2 62 53.2
CsaV3_5G036840 Cucumis sativus L. HOM05D003123 ORTHO05D003492 1.4e-08 63.2 40 72.5
FAN07G0209 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.4e-08 63.2 38 78.9
RcHm_v2.0_Chr5g0055971 Rosa chinensis HOM05D003123 ORTHO05D003492 1.4e-08 63.2 38 81.6
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 1.8e-08 62.8 35 82.9
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 1.8e-08 62.8 35 82.9
ClCG10G021960 Citrullus lanatus HOM05D003123 ORTHO05D003492 1.8e-08 62.8 35 82.9
MELO3C012480.2 Cucumis melo HOM05D003123 ORTHO05D003492 2.4e-08 62.4 40 72.5
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 2.4e-08 62.4 39 74.4
RcHm_v2.0_Chr7g0228771 Rosa chinensis HOM05D003123 ORTHO05D003492 2.4e-08 62.4 38 78.9
Ca_12615_v3 Cicer arietinum L. HOM05D003123 ORTHO05D003492 3.1e-08 62.0 40 75.0
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 3.1e-08 62.0 35 82.9
Gohir.D05G124000 Gossypium hirsutum HOM05D003123 ORTHO05D003492 3.1e-08 62.0 49 63.3
LjContig00238g0006541 Lotus japonicus HOM05D003123 ORTHO05D003492 3.1e-08 62.0 42 76.2
Phvul.005G025300 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 3.1e-08 62.0 40 70.0
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 3.1e-08 62.0 40 72.5
VMungo1080G1725 Vigna mungo HOM05D003123 ORTHO05D003492 3.1e-08 62.0 40 72.5
ClCG01G026000 Citrullus lanatus HOM05D003123 ORTHO05D003492 4.1e-08 61.6 40 70.0
ClCG05G026900 Citrullus lanatus HOM05D003123 ORTHO05D003492 4.1e-08 61.6 40 70.0
Migut.K00168 Erythranthe guttata HOM05D003123 ORTHO05D003492 4.1e-08 61.6 45 68.9
Oeu023005.1 Olea europaea HOM05D003123 ORTHO05D003492 4.1e-08 61.6 72 47.2
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 4.1e-08 61.6 40 70.0
Cfa020349 Carpinus fangiana HOM05D003123 ORTHO05D003492 5.3e-08 61.2 35 77.1
Lj1C1079T5 Lonicera japonica HOM05D003123 ORTHO05D003492 5.3e-08 61.2 46 63.0
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 5.3e-08 61.2 40 72.5
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 6.9e-08 60.8 35 82.9
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 6.9e-08 60.8 38 78.9
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 6.9e-08 60.8 40 72.5
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 6.9e-08 60.8 40 70.0
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 6.9e-08 60.8 40 70.0
Actinidia37868 Actinidia chinensis HOM05D003123 ORTHO05D003492 9.1e-08 60.5 64 51.6
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 9.1e-08 60.5 35 80.0
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 9.1e-08 60.5 46 60.9
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 9.1e-08 60.5 56 60.7
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 1.2e-07 60.1 34 79.4
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.2e-07 60.1 43 67.4
Actinidia17974 Actinidia chinensis HOM05D003123 ORTHO05D003492 1.5e-07 59.7 64 51.6
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.5e-07 59.7 40 77.5
FAN28G0013 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.5e-07 59.7 38 76.3
Aqoxy3G03721 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 2.0e-07 59.3 40 70.0
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 2.0e-07 59.3 46 63.0
CiPaw.04G106900 Carya illinoinensis HOM05D003123 ORTHO05D003492 2.0e-07 59.3 40 67.5
FAN26G0171 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.0e-07 59.3 38 76.3
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 2.0e-07 59.3 35 77.1
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 2.6e-07 58.9 35 77.1
Eucgr.C02983 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.6e-07 58.9 43 65.1
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 2.6e-07 58.9 40 72.5
Ah.04g150340 Amaranthus hybridus HOM05D003123 ORTHO05D003492 4.5e-07 58.2 40 67.5
Dinv22133 Davidia involucrata HOM05D003123 ORTHO05D003492 4.5e-07 58.2 38 65.8
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 4.5e-07 58.2 40 67.5
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 5.9e-07 57.8 38 65.8
Gohir.D05G275700 Gossypium hirsutum HOM05D003123 ORTHO05D003492 5.9e-07 57.8 35 80.0
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 5.9e-07 57.8 35 80.0
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 5.9e-07 57.8 46 58.7
arahy.Tifrunner.gnm1.ann1.5X1NVT Arachis hypogaea HOM05D005466 ORTHO05D006526 7.7e-07 57.4 27 96.3
MSTRG.26188 Avicennia marina HOM05D003123 ORTHO05D003492 7.7e-07 57.4 42 59.5
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 7.7e-07 57.4 34 73.5
Gohir.A05G273300 Gossypium hirsutum HOM05D003123 ORTHO05D003492 7.7e-07 57.4 35 80.0
Ah.04g150240 Amaranthus hybridus HOM05D003123 ORTHO05D003492 1.3e-06 56.6 40 65.0
Gorai.002G181400 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.3e-06 56.6 35 74.3
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 2.2e-06 55.8 40 62.5
Eucgr.A00588 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.2e-06 55.8 40 65.0
Hma1.2p1_0278F.1_g111890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 2.9e-06 55.5 38 65.8
PSO384G3002 Papaver somniferum HOM05D003123 ORTHO05D003492 2.9e-06 55.5 40 62.5
DCAR_030989 Daucus carota HOM05D003123 ORTHO05D003492 3.8e-06 55.1 35 74.3
SGA_v2.0_scaffold106G30554 Striga asiatica HOM05D003123 ORTHO05D003492 3.8e-06 55.1 47 59.6
AUR62018436 Chenopodium quinoa HOM05D003123 ORTHO05D003492 5.0e-06 54.7 40 65.0
PSO339G0960 Papaver somniferum HOM05D003123 ORTHO05D003492 5.0e-06 54.7 39 64.1
PGR042G0103 Punica granatum HOM05D003123 ORTHO05D003492 5.0e-06 54.7 43 60.5
GSVIVG01028863001 Vitis vinifera HOM05D003123 ORTHO05D003492 5.0e-06 54.7 46 58.7
AUR62020997 Chenopodium quinoa HOM05D003123 ORTHO05D003492 6.5e-06 54.3 40 62.5
Cc11_g07170 Coffea canephora HOM05D003123 ORTHO05D003492 6.5e-06 54.3 35 68.6
GSVIVG01025855001 Vitis vinifera HOM05D003123 ORTHO05D003492 6.5e-06 54.3 63 49.2
Eucgr.A00567 Eucalyptus grandis HOM05D003123 ORTHO05D003492 8.5e-06 53.9 40 62.5
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 8.5e-06 53.9 46 56.5
Zm00001eb353990 Zea mays HOM05D003123 ORTHO05D003492 8.5e-06 53.9 49 63.3


User provided reference genes

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