Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g038520 Medicago truncatula HOM05D021851 ORTHO05D024874 7.6e-200 700.3 349 100.0
Medtr8g038490 Medicago truncatula HOM05D021851 ORTHO05D024874 1.2e-91 340.9 264 69.7
TPR.G29404 Trifolium pratense HOM05D021851 ORTHO05D024874 2.5e-54 216.9 269 47.2
Medtr7g089190 Medicago truncatula HOM05D000515 ORTHO05D005511 3.1e-20 103.6 285 29.8
TPR.G16098 Trifolium pratense HOM05D000515 ORTHO05D005511 9.1e-20 102.1 274 29.9
FvH4_5g29290 Fragaria vesca HOM05D000515 ORTHO05D005511 1.0e-18 98.6 243 32.9
FAN18G0066 Fragaria x ananassa HOM05D000515 ORTHO05D005511 1.7e-18 97.8 243 32.9
Ca_27817_v3 Cicer arietinum L. HOM05D000515 ORTHO05D005511 2.9e-18 97.1 244 31.1
Cpa.g.sc92.77 Carica papaya HOM05D000515 ORTHO05D005511 5.0e-18 96.3 277 31.0
Lj1g0003942 Lotus japonicus HOM05D000515 ORTHO05D005511 8.5e-18 95.5 231 32.9
Medtr8g038500 Medicago truncatula HOM05D021851 ORTHO05D024874 1.1e-17 95.1 128 41.4
Atru.chr1.1382 Acer truncatum HOM05D000515 ORTHO05D005511 1.5e-17 94.7 277 29.6
Phvul.001G120300 Phaseolus vulgaris HOM05D000515 ORTHO05D005511 1.5e-17 94.7 242 30.2
Prupe.7G029000 Prunus persica HOM05D000515 ORTHO05D005511 1.5e-17 94.7 254 30.3
Glyma.03G124900 Glycine max HOM05D000515 ORTHO05D005511 1.9e-17 94.4 249 31.3
FAN08G2165 Fragaria x ananassa HOM05D000515 ORTHO05D005511 3.2e-17 93.6 243 32.5
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 3.2e-17 93.6 297 27.6
Gohir.A13G001900 Gossypium hirsutum HOM05D000515 ORTHO05D005511 4.2e-17 93.2 286 29.7
Thecc.05G121100 Theobroma cacao HOM05D000515 ORTHO05D005511 5.5e-17 92.8 289 27.7
CSS0006678 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D005511 7.2e-17 92.4 276 30.1
Ciclev10011059m.g Citrus clementina HOM05D000515 ORTHO05D005511 7.2e-17 92.4 277 30.3
CSS0034372 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D005511 9.4e-17 92.0 276 30.1
CiPaw.10G042400 Carya illinoinensis HOM05D000515 ORTHO05D005511 9.4e-17 92.0 278 30.9
Haze_20252 Corylus avellana HOM05D000515 ORTHO05D005511 9.4e-17 92.0 282 29.4
Gorai.013G001200 Gossypium raimondii HOM05D000515 ORTHO05D005511 1.6e-16 91.3 286 29.0
CANSAT64G0753 Cannabis sativa HOM05D000515 ORTHO05D005511 2.7e-16 90.5 273 29.3
PGR142G1719 Punica granatum HOM05D000515 ORTHO05D005511 2.7e-16 90.5 296 29.4
Lsat_1_v5_gn_7_61860 Lactuca sativa HOM05D000515 ORTHO05D005511 6.1e-16 89.4 275 27.6
PGSC0003DMG400008774 Solanum tuberosum HOM05D000515 ORTHO05D005511 6.1e-16 89.4 276 27.9
arahy.Tifrunner.gnm1.ann1.WT7LXE Arachis hypogaea HOM05D000515 ORTHO05D005511 8.0e-16 89.0 289 27.0
Solyc12g020110.2 Solanum lycopersicum HOM05D000515 ORTHO05D005511 8.0e-16 89.0 275 28.4
Sopen12g011610 Solanum pennellii HOM05D000515 ORTHO05D005511 8.0e-16 89.0 275 28.4
Peaxi162Scf00076g00328 Petunia axillaris HOM05D000515 ORTHO05D005511 1.0e-15 88.6 275 28.4
RcHm_v2.0_Chr7g0222151 Rosa chinensis HOM05D000515 ORTHO05D005511 1.4e-15 88.2 248 31.9
Nitab4.5_0000653g0130 Nicotiana tabacum HOM05D000515 ORTHO05D005511 1.8e-15 87.8 274 27.7
Nitab4.5_0010640g0010 Nicotiana tabacum HOM05D000515 ORTHO05D005511 1.8e-15 87.8 274 27.7
Prupe.7G028900 Prunus persica HOM05D000515 ORTHO05D005511 1.8e-15 87.8 246 32.1
QL07p012138 Quercus lobata HOM05D000515 ORTHO05D005511 1.8e-15 87.8 245 32.2
COL.COLO4_07034 Corchorus olitorius HOM05D000515 ORTHO05D005511 2.3e-15 87.4 223 30.5
Potri.016G033700 Populus trichocarpa HOM05D000515 ORTHO05D005511 2.3e-15 87.4 222 31.5
Cc06_g19970 Coffea canephora HOM05D000515 ORTHO05D005511 4.0e-15 86.7 221 30.8
DCAR_020591 Daucus carota HOM05D000515 ORTHO05D005511 4.0e-15 86.7 220 30.9
ECA248G3093 Erigeron canadensis HOM05D000515 ORTHO05D005511 4.0e-15 86.7 274 27.7
Lj1A1086T48 Lonicera japonica HOM05D000515 ORTHO05D005511 4.0e-15 86.7 243 27.6
MD00G1160000 Malus domestica HOM05D000515 ORTHO05D005511 4.0e-15 86.7 228 31.6
HanXRQChr13g0406691 Helianthus annuus HOM05D000515 ORTHO05D005511 5.2e-15 86.3 293 25.3
Potri.016G033600 Populus trichocarpa HOM05D000515 ORTHO05D005511 5.2e-15 86.3 220 31.8
Rhsim04G0113800 Rhododendron simsii HOM05D000515 ORTHO05D005511 5.2e-15 86.3 242 31.4
MD15G1139300 Malus domestica HOM05D000515 ORTHO05D005511 6.8e-15 85.9 243 30.0
Potri.016G033800 Populus trichocarpa HOM05D000515 ORTHO05D005511 6.8e-15 85.9 224 31.2
Potri.016G034000 Populus trichocarpa HOM05D000515 ORTHO05D005511 1.2e-14 85.1 221 29.9
SHI52066 Sapria himalayana HOM05D000515 ORTHO05D005511 1.5e-14 84.7 230 32.2
Sc19g0008090 Simmondsia chinensis HOM05D000515 ORTHO05D005511 1.5e-14 84.7 253 27.7
AUR62030289 Chenopodium quinoa HOM05D000515 ORTHO05D005511 3.4e-14 83.6 275 28.0
DCAR_009131 Daucus carota HOM05D000515 ORTHO05D005511 3.4e-14 83.6 220 30.0
DCAR_009135 Daucus carota HOM05D000515 ORTHO05D005511 3.4e-14 83.6 220 30.0
Ah.04g150800 Amaranthus hybridus HOM05D000515 ORTHO05D005511 4.4e-14 83.2 225 29.8
CAN.G489.3 Capsicum annuum HOM05D000515 ORTHO05D005511 4.4e-14 83.2 233 28.8
Hund24560 Selenicereus undatus HOM05D000515 ORTHO05D005511 4.4e-14 83.2 277 28.5
EL10Ac3g07263 Beta vulgaris HOM05D000515 ORTHO05D005511 5.7e-14 82.8 276 28.3
Lj1g0011417 Lotus japonicus HOM05D000515 ORTHO05D005511 5.7e-14 82.8 266 30.5
MSTRG.26167 Avicennia marina HOM05D000515 ORTHO05D005511 7.5e-14 82.4 274 28.1
Dinv21481 Davidia involucrata HOM05D000515 ORTHO05D005511 7.5e-14 82.4 243 30.5
Oeu005219.1 Olea europaea HOM05D000515 ORTHO05D005511 2.2e-13 80.9 269 29.4
Dinv08255 Davidia involucrata HOM05D000515 ORTHO05D005511 3.7e-13 80.1 243 30.0
AUR62018374 Chenopodium quinoa HOM05D000515 ORTHO05D005511 4.8e-13 79.7 278 27.3
Pp3c24_8230 Physcomitrium patens HOM05D000515 ORTHO05D005511 4.8e-13 79.7 287 26.1
AUR62030288 Chenopodium quinoa HOM05D000515 ORTHO05D005511 6.3e-13 79.3 275 27.3
Eucgr.H00628 Eucalyptus grandis HOM05D000515 ORTHO05D005511 1.8e-12 77.8 240 29.2
AUR62018373 Chenopodium quinoa HOM05D000515 ORTHO05D005511 4.1e-12 76.6 278 27.3
Migut.K00146 Erythranthe guttata HOM05D000515 ORTHO05D005511 4.1e-12 76.6 277 27.8
PSO017G0341 Papaver somniferum HOM05D000515 ORTHO05D005511 4.1e-12 76.6 226 30.1
SMO169G0179 Selaginella moellendorffii HOM05D000515 ORTHO05D005511 1.6e-11 74.7 278 25.9
AagrBONN_evm.TU.Sc2ySwM_344.3828 Anthoceros agrestis HOM05D000515 ORTHO05D005511 2.0e-11 74.3 234 28.2
Os07g0642400 Oryza sativa ssp. japonica HOM05D000515 ORTHO05D005511 2.7e-11 73.9 199 31.2
SEGI_29164 Sequoiadendron giganteum HOM05D000515 ORTHO05D005511 3.5e-11 73.6 276 27.2
HPP92_001142 Vanilla planifolia HOM05D000515 ORTHO05D005511 5.9e-11 72.8 277 26.4
arahy.Tifrunner.gnm1.ann1.C6MU4Z Arachis hypogaea HOM05D000515 ORTHO05D005511 7.7e-11 72.4 255 27.1
SMO203G0195 Selaginella moellendorffii HOM05D000515 ORTHO05D005511 1.7e-10 71.2 286 25.2
SMO259G0046 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 5.0e-10 69.7 318 24.2
CDE08G0661 Ceratophyllum demersum HOM05D000515 ORTHO05D005511 1.1e-09 68.6 201 28.4
GSVIVG01006339001 Vitis vinifera HOM05D000515 ORTHO05D001911 2.5e-09 67.4 221 25.3
PSO017G7302 Papaver somniferum HOM05D000515 ORTHO05D005511 3.3e-09 67.0 252 28.2
MBI17_g19509_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D003188 4.2e-09 66.6 280 24.6
Zm00001eb329060 Zea mays HOM05D000515 ORTHO05D005511 5.5e-09 66.2 202 29.2
vmacro08997 Vaccinium macrocarpon HOM05D000515 ORTHO05D005511 7.2e-09 65.9 179 30.2
arahy.Tifrunner.gnm1.ann1.YS7E3I Arachis hypogaea HOM05D000515 ORTHO05D005511 9.5e-09 65.5 151 29.8
MCO11G082 Micromonas commoda HOM05D000515 ORTHO05D005511 2.8e-08 63.9 282 24.8
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.0e-07 62.0 42 76.2
Sp1g37240 Schrenkiella parvula HOM05D000515 ORTHO05D001911 1.0e-07 62.0 326 24.2
Sabra16G0054400 Salix brachista HOM05D000515 ORTHO05D005511 1.4e-07 61.6 204 28.9
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 4.0e-07 60.1 41 75.6
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 8.9e-07 58.9 41 73.2
Ca_11962_v3 Cicer arietinum L. HOM05D000515 ORTHO05D003188 1.5e-06 58.2 213 24.9
HanXRQChr09g0263971 Helianthus annuus HOM05D000515 ORTHO05D001911 2.0e-06 57.8 252 22.2
Sabra16G0036500 Salix brachista HOM05D000515 ORTHO05D005511 2.0e-06 57.8 202 27.2
HPP92_001116 Vanilla planifolia HOM05D000515 ORTHO05D005511 2.6e-06 57.4 147 29.9
MD17G1098500 Malus domestica HOM05D000515 ORTHO05D003530 3.4e-06 57.0 230 23.5
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 3.4e-06 57.0 42 66.7
SGA_v2.0_scaffold100G29678 Striga asiatica HOM05D000463 ORTHO05D001294 4.4e-06 56.6 74 37.8
PSO210G5274 Papaver somniferum HOM05D001972 ORTHO05D002555 5.7e-06 56.2 80 33.8
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 7.5e-06 55.8 107 26.2
BcaC09g48958 Brassica carinata HOM05D000515 ORTHO05D001911 7.5e-06 55.8 288 24.0
Cfa023868 Carpinus fangiana HOM05D021851 ORTHO05D024874 7.5e-06 55.8 73 34.2
ECA233G4613 Erigeron canadensis HOM05D000515 ORTHO05D001911 7.5e-06 55.8 320 22.2
TPR.G6441 Trifolium pratense HOM05D000463 ORTHO05D001294 9.8e-06 55.5 49 40.8


User provided reference genes

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