Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 9.8e-117 423.7 249 100.0
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.8e-107 392.9 252 92.5
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 8.0e-103 377.5 249 85.9
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 4.4e-101 371.7 249 84.3
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 2.9e-92 342.4 181 91.2
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 1.4e-91 340.1 249 79.5
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 1.9e-91 339.7 249 76.3
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 9.2e-91 337.4 249 83.1
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 1.2e-90 337.0 181 89.0
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 4.6e-90 335.1 181 88.4
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 2.3e-89 332.8 248 77.4
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.3e-89 332.8 249 73.5
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 1.5e-88 330.1 252 77.8
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 2.5e-88 329.3 249 81.1
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 4.3e-88 328.6 181 87.8
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.8e-87 325.9 251 80.9
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 8.1e-87 324.3 250 77.6
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.8e-86 323.2 250 82.0
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 2.3e-86 322.8 280 68.2
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 3.1e-86 322.4 249 73.5
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 4.0e-86 322.0 249 77.5
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 4.0e-86 322.0 249 78.7
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 5.2e-86 321.6 250 72.8
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 8.9e-86 320.9 249 73.9
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 2.0e-85 319.7 249 65.1
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 2.0e-85 319.7 249 77.1
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 2.0e-85 319.7 181 84.5
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.6e-85 319.3 252 77.0
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 3.4e-85 318.9 249 75.9
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 5.8e-85 318.2 258 74.8
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 7.5e-85 317.8 247 71.3
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 1.3e-84 317.0 249 78.7
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 1.7e-84 316.6 250 71.6
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 6.4e-84 314.7 181 83.4
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 1.4e-83 313.5 180 83.9
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 1.9e-83 313.2 181 82.3
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.4e-83 312.8 179 83.8
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 2.4e-83 312.8 181 81.8
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 4.1e-83 312.0 248 77.0
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 4.1e-83 312.0 179 83.8
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 5.4e-83 311.6 249 78.3
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 5.4e-83 311.6 248 64.5
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 1.6e-82 310.1 181 80.7
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 2.1e-82 309.7 181 79.6
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 2.7e-82 309.3 181 80.7
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 3.5e-82 308.9 248 75.8
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 4.6e-82 308.5 248 73.4
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 2.3e-81 306.2 181 79.0
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 5.1e-81 305.1 181 81.2
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 5.1e-81 305.1 181 79.6
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 8.6e-81 304.3 248 75.0
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 1.1e-80 303.9 245 72.7
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 1.5e-80 303.5 256 74.2
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 1.9e-80 303.1 181 79.6
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 4.3e-80 302.0 278 70.5
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 5.6e-80 301.6 181 79.0
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 7.3e-80 301.2 249 72.3
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 7.3e-80 301.2 181 79.0
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 9.5e-80 300.8 248 73.0
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 9.5e-80 300.8 281 62.3
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 2.1e-79 299.7 181 79.0
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 4.7e-79 298.5 248 71.0
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 5.2e-78 295.0 248 71.0
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 5.2e-78 295.0 169 82.8
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 6.8e-78 294.7 180 79.4
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.5e-77 293.5 248 70.6
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.5e-77 293.5 301 60.5
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 2.0e-77 293.1 149 92.6
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 2.6e-77 292.7 169 82.8
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 3.4e-77 292.4 180 78.3
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 4.4e-77 292.0 250 66.4
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 4.4e-77 292.0 301 54.5
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 7.6e-77 291.2 249 65.1
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 9.9e-77 290.8 212 67.5
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.6e-74 283.5 171 80.1
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.1e-74 283.1 170 80.6
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 6.0e-74 281.6 162 81.5
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.0e-73 280.8 181 74.0
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 3.3e-72 275.8 146 90.4
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 4.3e-72 275.4 213 66.2
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 2.8e-71 272.7 170 77.1
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 6.2e-71 271.6 182 73.1
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 6.9e-70 268.1 309 53.4
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 9.0e-70 267.7 209 68.4
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 9.3e-67 257.7 152 79.6
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.2e-66 257.3 198 66.7
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 2.3e-65 253.1 243 60.9
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 3.9e-65 252.3 147 80.3
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 1.9e-64 250.0 181 63.5
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.3e-63 247.3 185 63.8
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 4.8e-63 245.4 181 63.5
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 4.5e-61 238.8 250 61.2
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 3.8e-60 235.7 257 66.5
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 3.8e-60 235.7 282 63.1
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 1.1e-59 234.2 198 62.1
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 4.2e-59 232.3 344 42.4
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.5e-56 223.0 268 45.5
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 4.3e-56 222.2 126 84.1
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 5.6e-56 221.9 279 47.3
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 1.3e-52 210.7 171 84.8
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 2.2e-52 209.9 187 53.5
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.2e-50 204.1 155 67.7
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.3e-47 194.1 132 69.7
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.2e-42 177.6 116 75.0
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 8.7e-41 171.4 118 66.9
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.5e-37 160.6 146 59.6
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.5e-37 160.6 115 67.8
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 6.5e-36 155.2 101 75.2
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 5.3e-30 135.6 82 79.3
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 3.8e-28 129.4 167 68.3
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 1.4e-25 120.9 107 59.8
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-20 104.4 112 51.8
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 7.4e-16 88.6 124 62.9
TPR.G1897 Trifolium pratense HOM05D006852 ORTHO05D008585 8.0e-10 68.6 89 83.1
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 6.7e-09 65.5 31 96.8
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 4.4e-08 62.8 36 80.6
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 5.7e-08 62.4 34 85.3
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 1.7e-07 60.8 35 77.1


User provided reference genes

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