Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g036830 Medicago truncatula HOM05D008019 ORTHO05D010184 2.4e-62 241.9 114 100.0
TPR.G1886 Trifolium pratense HOM05D008019 ORTHO05D010184 3.9e-20 101.7 74 64.9
Lj3g0025736 Lotus japonicus HOM05D008019 ORTHO05D010184 3.6e-18 95.1 62 74.2
Glyma.12G238000 Glycine max HOM05D008019 ORTHO05D010184 4.8e-18 94.7 73 60.3
Lalb_Chr19g0132141 Lupinus albus HOM05D008019 ORTHO05D010184 4.0e-17 91.7 73 63.0
Phvul.011G212700 Phaseolus vulgaris HOM05D008019 ORTHO05D010184 1.3e-15 86.7 71 57.7
VMungo1127G0775 Vigna mungo HOM05D008019 ORTHO05D010184 4.9e-15 84.7 71 54.9
arahy.Tifrunner.gnm1.ann1.SF3C2I Arachis hypogaea HOM05D008019 ORTHO05D010184 4.6e-13 78.2 62 59.7
arahy.Tifrunner.gnm1.ann1.V37GBM Arachis hypogaea HOM05D008019 ORTHO05D010184 3.9e-12 75.1 62 58.1
CANSAT80G0909 Cannabis sativa HOM05D008019 ORTHO05D010184 3.6e-10 68.6 59 52.5
Prupe.2G012100 Prunus persica HOM05D008019 ORTHO05D010184 1.8e-09 66.2 53 54.7
Cfa010760 Carpinus fangiana HOM05D008019 ORTHO05D010184 2.4e-09 65.9 52 53.8
Haze_03214 Corylus avellana HOM05D008019 ORTHO05D010184 2.4e-09 65.9 52 53.8
QL04p007219 Quercus lobata HOM05D008019 ORTHO05D010184 4.0e-09 65.1 74 47.3
TAR623G0854 Trochodendron aralioides HOM05D008019 ORTHO05D010184 9.0e-09 63.9 66 48.5
PGR044G0644 Punica granatum HOM05D008019 ORTHO05D010184 1.2e-08 63.5 74 45.9
MD02G1313500 Malus domestica HOM05D008019 ORTHO05D010184 2.6e-08 62.4 46 60.9
RcHm_v2.0_Chr1g0315801 Rosa chinensis HOM05D008019 ORTHO05D010184 4.5e-08 61.6 55 50.9
Eucgr.J01265 Eucalyptus grandis HOM05D008019 ORTHO05D010184 5.8e-08 61.2 69 43.5
Gohir.A12G094001 Gossypium hirsutum HOM05D008019 ORTHO05D010184 9.9e-08 60.5 69 49.3
TWI09G1168 Tripterygium wilfordii HOM05D008019 ORTHO05D010184 1.3e-07 60.1 34 70.6
ECA248G1827 Erigeron canadensis HOM05D008019 ORTHO05D010184 2.2e-07 59.3 32 71.9
FvH4_7g00910 Fragaria vesca HOM05D008019 ORTHO05D010184 2.9e-07 58.9 40 60.0
FAN06G1027 Fragaria x ananassa HOM05D008019 ORTHO05D010184 2.9e-07 58.9 40 60.0
TAR623G1004 Trochodendron aralioides HOM05D008019 ORTHO05D010184 2.9e-07 58.9 62 48.4
CSS0044570 Camellia sinensis var. sinensis HOM05D008019 ORTHO05D010184 3.8e-07 58.5 41 58.5
HanXRQChr01g0016161 Helianthus annuus HOM05D008019 ORTHO05D010184 4.9e-07 58.2 32 68.8
Nn2g15438 Nelumbo nucifera HOM05D008019 ORTHO05D010184 4.9e-07 58.2 67 43.3
Rhsim07G0054900 Rhododendron simsii HOM05D008019 ORTHO05D010184 6.4e-07 57.8 57 45.6
CAN.G1155.15 Capsicum annuum HOM05D008019 ORTHO05D010184 8.4e-07 57.4 70 42.9
Ciclev10033035m.g Citrus clementina HOM05D008019 ORTHO05D010184 8.4e-07 57.4 49 53.1
Potri.001G268000 Populus trichocarpa HOM05D008019 ORTHO05D010184 8.4e-07 57.4 39 59.0
Potri.009G062400 Populus trichocarpa HOM05D008019 ORTHO05D010184 8.4e-07 57.4 74 41.9
FAN10G3815 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.1e-06 57.0 40 57.5
Gohir.D12G096933 Gossypium hirsutum HOM05D008019 ORTHO05D010184 1.1e-06 57.0 69 47.8
FAN01G0739 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.4e-06 56.6 40 57.5
Actinidia31058 Actinidia chinensis HOM05D008019 ORTHO05D010184 1.9e-06 56.2 40 57.5
Aqoxy7G00800 Aquilegia oxysepala HOM05D008019 ORTHO05D010184 1.9e-06 56.2 59 49.2
Gorai.008G105200 Gossypium raimondii HOM05D008019 ORTHO05D010184 1.9e-06 56.2 73 45.2
Manes.07G005100 Manihot esculenta HOM05D008019 ORTHO05D010184 1.9e-06 56.2 29 75.9
Oeu010780.1 Olea europaea HOM05D008019 ORTHO05D010184 3.2e-06 55.5 32 65.6
COL.COLO4_23925 Corchorus olitorius HOM05D008019 ORTHO05D010184 4.2e-06 55.1 52 50.0
Dinv43452 Davidia involucrata HOM05D008019 ORTHO05D010184 4.2e-06 55.1 41 58.5
Cc02_g27810 Coffea canephora HOM05D008019 ORTHO05D010184 5.5e-06 54.7 42 52.4
Sc10g0000030 Simmondsia chinensis HOM05D008019 ORTHO05D010184 5.5e-06 54.7 48 52.1
THA.LOC104819690 Tarenaya hassleriana HOM05D008019 ORTHO05D010184 7.1e-06 54.3 41 61.0
Thecc.01G411900 Theobroma cacao HOM05D008019 ORTHO05D010184 7.1e-06 54.3 42 52.4
vmacro13657 Vaccinium macrocarpon HOM05D008019 ORTHO05D010184 7.1e-06 54.3 46 47.8
MSTRG.17046 Avicennia marina HOM05D008019 ORTHO05D010184 9.3e-06 53.9 29 72.4
Lsat_1_v5_gn_1_107820 Lactuca sativa HOM05D008019 ORTHO05D010184 9.3e-06 53.9 57 45.6
MBI04_g13624_MAGBIO Magnolia biondii HOM05D008019 ORTHO05D010184 9.3e-06 53.9 56 46.4


User provided reference genes

Program Settings