Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.3e-35 151.8 79 100.0
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.2e-28 129.4 66 98.5
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 2.7e-28 128.3 66 95.5
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 7.6e-23 110.2 64 84.4
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.2e-22 108.6 65 80.0
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 2.9e-22 108.2 67 76.1
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 3.8e-22 107.8 64 81.2
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.2e-21 104.4 64 76.6
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 4.2e-21 104.4 64 73.4
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 7.1e-21 103.6 66 69.7
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.3e-21 103.2 65 69.2
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 9.3e-21 103.2 66 72.7
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 9.3e-21 103.2 66 72.7
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.2e-20 102.8 64 75.0
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 2.7e-20 101.7 64 73.4
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 2.7e-20 101.7 64 73.4
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.6e-20 100.9 64 70.3
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 4.6e-20 100.9 64 70.3
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 4.6e-20 100.9 67 64.2
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 4.6e-20 100.9 67 64.2
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 4.6e-20 100.9 66 71.2
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 6.0e-20 100.5 65 70.8
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 6.0e-20 100.5 66 68.2
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.0e-20 100.5 64 76.6
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.0e-19 99.8 66 72.7
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.0e-19 99.8 64 76.6
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.7e-19 99.0 64 68.8
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.7e-19 99.0 64 68.8
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 3.9e-19 97.8 64 70.3
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 5.1e-19 97.4 65 72.3
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 6.6e-19 97.1 65 64.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 6.6e-19 97.1 67 65.7
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.6e-19 97.1 64 73.4
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 8.7e-19 96.7 64 70.3
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.5e-18 95.9 66 66.7
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-18 95.9 67 67.2
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.9e-18 95.5 66 66.7
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.9e-18 95.5 66 66.7
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.5e-18 95.1 64 71.9
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.5e-18 95.1 64 71.9
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.6e-18 94.0 64 70.3
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 2.1e-17 92.0 67 64.2
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.1e-17 92.0 67 62.7
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 6.2e-17 90.5 64 65.6
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 6.2e-17 90.5 63 66.7
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 8.1e-17 90.1 62 69.4
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.1e-16 89.7 65 66.2
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.1e-16 89.7 65 66.2
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.1e-16 89.7 65 66.2
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.8e-16 89.0 64 68.8
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 3.1e-16 88.2 65 64.6
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.1e-16 88.2 67 61.2
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 4.0e-16 87.8 66 62.1
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 4.0e-16 87.8 65 64.6
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 6.9e-16 87.0 67 61.2
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 6.9e-16 87.0 62 67.7
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 6.9e-16 87.0 61 70.5
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.9e-16 87.0 67 62.7
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 9.0e-16 86.7 65 63.1
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 9.0e-16 86.7 62 66.1
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.2e-15 86.3 62 67.7
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.5e-15 85.9 65 61.5
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.5e-15 85.9 65 61.5
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-15 85.9 67 61.2
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.0e-15 85.5 68 61.8
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.0e-15 85.5 63 63.5
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 2.0e-15 85.5 65 63.1
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.6e-15 85.1 60 65.0
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 2.6e-15 85.1 62 69.4
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 3.4e-15 84.7 65 63.1
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.4e-15 84.7 62 66.1
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.4e-15 84.7 58 69.0
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.4e-15 84.7 58 69.0
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.5e-15 84.3 61 63.9
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 4.5e-15 84.3 61 63.9
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.8e-15 84.0 67 65.7
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 5.8e-15 84.0 62 66.1
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 5.8e-15 84.0 62 64.5
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 7.6e-15 83.6 64 59.4
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 7.6e-15 83.6 73 61.6
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 9.9e-15 83.2 62 64.5
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-14 82.8 61 62.3
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.3e-14 82.8 62 67.7
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.7e-14 82.4 61 63.9
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.7e-14 82.4 62 66.1
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.7e-14 82.4 60 65.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.7e-14 82.4 60 65.0
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.2e-14 82.0 62 66.1
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.2e-14 82.0 62 61.3
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 2.9e-14 81.6 61 65.6
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.9e-14 81.6 61 67.2
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 3.8e-14 81.3 59 61.0
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 3.8e-14 81.3 62 64.5
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 4.9e-14 80.9 57 64.9
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 4.9e-14 80.9 57 64.9
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.4e-14 80.1 64 62.5
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.4e-14 80.1 64 62.5
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.1e-13 79.7 57 64.9
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.1e-13 79.7 60 61.7
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-13 79.7 61 65.6
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 1.9e-13 79.0 64 62.5
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.9e-13 79.0 61 59.0
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.2e-13 78.2 59 66.1
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 3.2e-13 78.2 64 62.5
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 5.4e-13 77.4 58 63.8
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.3e-13 76.6 62 62.9
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.3e-13 76.6 62 62.9
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 9.3e-13 76.6 52 69.2
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.2e-12 76.3 62 62.9
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.2e-12 76.3 62 62.9
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-12 75.9 62 59.7
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-12 75.9 62 59.7
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.6e-12 75.9 57 63.2
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 2.1e-12 75.5 62 61.3
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 2.1e-12 75.5 62 61.3
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 2.7e-12 75.1 60 58.3
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 2.7e-12 75.1 65 55.4
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 2.7e-12 75.1 65 55.4
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 2.7e-12 75.1 65 53.8
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 2.7e-12 75.1 62 59.7
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.5e-12 74.7 59 61.0
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 3.5e-12 74.7 62 59.7
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 3.5e-12 74.7 62 61.3
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 6.0e-12 73.9 62 59.7
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 6.0e-12 73.9 64 57.8
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 7.9e-12 73.6 65 53.8
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 7.9e-12 73.6 65 53.8
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 7.9e-12 73.6 65 53.8
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 7.9e-12 73.6 66 57.6
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.0e-11 73.2 65 56.9
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.0e-11 73.2 62 58.1
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.3e-11 72.0 62 59.7
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 3.0e-11 71.6 51 64.7
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 5.1e-11 70.9 57 61.4
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 5.1e-11 70.9 57 61.4
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.1e-11 70.9 59 61.0
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 6.7e-11 70.5 62 59.7
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 8.7e-11 70.1 55 61.8
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.9e-10 68.9 61 55.7
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 2.5e-10 68.6 62 56.5
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 4.3e-10 67.8 62 54.8
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.6e-10 67.4 62 51.6
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 9.6e-10 66.6 59 54.2
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.6e-09 65.9 51 60.8
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 1.6e-09 65.9 62 53.2
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.6e-09 65.9 56 58.9
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.8e-09 64.3 62 56.5
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 6.2e-09 63.9 58 55.2
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 8.1e-09 63.5 58 53.4
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 8.1e-09 63.5 58 55.2
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.1e-08 63.2 59 50.8
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.1e-08 63.2 39 79.5
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.4e-08 62.8 58 51.7
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.8e-08 62.4 53 58.5
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 2.4e-08 62.0 62 51.6
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 3.1e-08 61.6 64 51.6
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.0e-08 61.2 58 51.7
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 4.0e-08 61.2 61 52.5
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 4.0e-08 61.2 58 53.4
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 4.0e-08 61.2 58 55.2
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 4.0e-08 61.2 58 55.2
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 6.9e-08 60.5 65 49.2
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 9.0e-08 60.1 58 56.9
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 2.6e-07 58.5 62 54.8
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.7e-06 55.8 46 56.5


User provided reference genes

Program Settings