Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g035940 Medicago truncatula HOM05D002803 ORTHO05D003089 5.9e-58 227.3 109 100.0
TPR.G11262 Trifolium pratense HOM05D002803 ORTHO05D003089 5.9e-34 147.5 124 66.1
Glyma.17G018400 Glycine max HOM05D002803 ORTHO05D003089 5.4e-19 97.8 144 39.6
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 2.0e-18 95.9 150 40.0
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 6.6e-17 90.9 52 73.1
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 1.5e-16 89.7 152 38.8
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 1.2e-15 86.7 68 63.2
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 2.8e-15 85.5 135 37.8
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 5.8e-13 77.8 119 41.2
Lj5g0016950 Lotus japonicus HOM05D002803 ORTHO05D003089 1.1e-08 63.5 47 68.1
HPP92_023771 Vanilla planifolia HOM05D002803 ORTHO05D003089 4.3e-08 61.6 47 53.2
HPP92_026410 Vanilla planifolia HOM05D002803 ORTHO05D003089 4.3e-08 61.6 47 53.2
EL10Ac6g14513 Beta vulgaris HOM05D002803 ORTHO05D003089 7.3e-08 60.8 36 63.9
Sabra10G0099500 Salix brachista HOM05D002803 ORTHO05D003089 9.5e-08 60.5 36 69.4
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 1.2e-07 60.1 45 57.8
Lj3P1020T26 Lonicera japonica HOM05D002803 ORTHO05D003089 2.8e-07 58.9 73 42.5
Oeu044623.1 Olea europaea HOM05D002803 ORTHO05D003089 2.8e-07 58.9 51 54.9
Sc04g0006760 Simmondsia chinensis HOM05D002803 ORTHO05D003089 2.8e-07 58.9 40 60.0
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 3.6e-07 58.5 36 61.1
AUR62007738 Chenopodium quinoa HOM05D002803 ORTHO05D003089 3.6e-07 58.5 54 51.9
ClCG06G015060 Citrullus lanatus HOM05D002803 ORTHO05D003089 3.6e-07 58.5 34 61.8
Cc11_g10690 Coffea canephora HOM05D002803 ORTHO05D003089 3.6e-07 58.5 36 66.7
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 3.6e-07 58.5 39 59.0
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 3.6e-07 58.5 42 59.5
unitig_699.g19513 Utricularia gibba HOM05D002803 ORTHO05D003089 4.7e-07 58.2 45 48.9
Dinv16513 Davidia involucrata HOM05D002803 ORTHO05D003089 6.2e-07 57.8 52 53.8
SGA_v2.0_scaffold59G20630 Striga asiatica HOM05D002803 ORTHO05D003089 6.2e-07 57.8 40 60.0
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 6.2e-07 57.8 78 42.3
Ah.03g137920 Amaranthus hybridus HOM05D002803 ORTHO05D003089 8.0e-07 57.4 36 61.1
Eucgr.B03059 Eucalyptus grandis HOM05D002803 ORTHO05D003089 8.0e-07 57.4 36 61.1
Peaxi162Scf00367g00712 Petunia axillaris HOM05D002803 ORTHO05D003089 8.0e-07 57.4 44 56.8
Rhsim12G0080900 Rhododendron simsii HOM05D002803 ORTHO05D003089 8.0e-07 57.4 42 59.5
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 1.1e-06 57.0 83 43.4
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 1.1e-06 57.0 44 56.8
Nitab4.5_0000221g0090 Nicotiana tabacum HOM05D002803 ORTHO05D003089 1.1e-06 57.0 98 37.8
Nitab4.5_0005803g0020 Nicotiana tabacum HOM05D002803 ORTHO05D003089 1.1e-06 57.0 41 58.5
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 1.1e-06 57.0 44 50.0
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 1.1e-06 57.0 42 61.9
Zm00001eb252480 Zea mays HOM05D002803 ORTHO05D003089 1.1e-06 57.0 42 50.0
Zm00001eb359270 Zea mays HOM05D002803 ORTHO05D003089 1.1e-06 57.0 37 56.8
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 1.4e-06 56.6 41 53.7
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 1.4e-06 56.6 76 40.8
PGSC0003DMG400007474 Solanum tuberosum HOM05D002803 ORTHO05D003089 1.4e-06 56.6 66 48.5
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 1.4e-06 56.6 44 47.7
unitig_52.g17150 Utricularia gibba HOM05D002803 ORTHO05D003089 1.4e-06 56.6 91 37.4
unitig_8.g3972 Utricularia gibba HOM05D002803 ORTHO05D003089 1.4e-06 56.6 43 55.8
MSTRG.2266 Avicennia marina HOM05D002803 ORTHO05D003089 1.8e-06 56.2 49 51.0
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 1.8e-06 56.2 42 57.1
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 1.8e-06 56.2 90 38.9
Sed0001062 Sechium edule HOM05D002803 ORTHO05D003089 1.8e-06 56.2 71 40.8
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 1.8e-06 56.2 75 41.3
vmacro01362 Vaccinium macrocarpon HOM05D002803 ORTHO05D003089 1.8e-06 56.2 42 59.5
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 2.3e-06 55.8 42 59.5
Nitab4.5_0007199g0010 Nicotiana tabacum HOM05D002803 ORTHO05D003089 2.3e-06 55.8 98 37.8
TAR622G0697 Trochodendron aralioides HOM05D002803 ORTHO05D003089 2.3e-06 55.8 42 59.5
Ah.11g047160 Amaranthus hybridus HOM05D002803 ORTHO05D003089 3.1e-06 55.5 65 43.1
AUR62032186 Chenopodium quinoa HOM05D002803 ORTHO05D003089 3.1e-06 55.5 34 61.8
EL10Ac5g11244 Beta vulgaris HOM05D002803 ORTHO05D003089 4.0e-06 55.1 34 58.8
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 4.0e-06 55.1 34 61.8
Duzib251G0623 Durio zibethinus HOM05D002803 ORTHO05D003089 4.0e-06 55.1 35 60.0
Thhalv10011830m.g Eutrema salsugineum HOM05D002803 ORTHO05D003089 4.0e-06 55.1 60 46.7
Sopen04g002030 Solanum pennellii HOM05D002803 ORTHO05D003089 4.0e-06 55.1 61 52.5
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 4.0e-06 55.1 49 46.9
Cfa018638 Carpinus fangiana HOM05D002803 ORTHO05D003089 5.2e-06 54.7 34 64.7
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 5.2e-06 54.7 34 55.9
DCAR_030089 Daucus carota HOM05D002803 ORTHO05D003089 5.2e-06 54.7 37 64.9
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 5.2e-06 54.7 93 33.3
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 5.2e-06 54.7 37 59.5
AUR62036946 Chenopodium quinoa HOM05D002803 ORTHO05D003089 6.8e-06 54.3 34 58.8
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 6.8e-06 54.3 35 60.0
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 6.8e-06 54.3 74 39.2
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 6.8e-06 54.3 37 59.5
Os06g0499100 Oryza sativa ssp. japonica HOM05D002803 ORTHO05D003089 6.8e-06 54.3 38 57.9
ATR1159G035 Amborella trichopoda HOM05D002803 ORTHO05D003089 8.9e-06 53.9 94 33.0
Duzib205G0759 Durio zibethinus HOM05D002803 ORTHO05D003089 8.9e-06 53.9 34 61.8
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 8.9e-06 53.9 42 59.5
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 8.9e-06 53.9 42 59.5
Os02g0711400 Oryza sativa ssp. japonica HOM05D002803 ORTHO05D003089 8.9e-06 53.9 34 58.8
PSO017G4670 Papaver somniferum HOM05D002803 ORTHO05D003089 8.9e-06 53.9 44 50.0
PSO478G0765 Papaver somniferum HOM05D002803 ORTHO05D003089 8.9e-06 53.9 44 50.0
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 8.9e-06 53.9 59 47.5
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 8.9e-06 53.9 94 36.2
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 8.9e-06 53.9 85 41.2
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 8.9e-06 53.9 34 61.8
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 8.9e-06 53.9 34 61.8
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 8.9e-06 53.9 85 37.6
Zm00001eb252490 Zea mays HOM05D002803 ORTHO05D003089 8.9e-06 53.9 43 51.2
Zm00001eb281370 Zea mays HOM05D002803 ORTHO05D003089 8.9e-06 53.9 57 45.6


User provided reference genes

Program Settings