Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.7e-57 225.7 107 100.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 6.4e-57 223.8 107 98.1
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.4e-56 222.6 106 99.1
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 9.2e-56 219.9 107 95.3
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 9.2e-56 219.9 105 98.1
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.2e-55 219.5 107 95.3
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 6.6e-54 213.8 107 91.6
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 5.6e-53 210.7 107 90.7
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.8e-52 208.4 107 88.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 4.7e-52 207.6 107 88.8
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 6.2e-52 207.2 107 87.9
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 8.1e-52 206.8 107 86.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.3e-51 205.3 107 85.0
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.3e-49 199.5 107 85.0
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 86.9
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 86.0
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 86.0
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 86.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.4e-48 195.3 106 86.8
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 86.0
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 85.0
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 85.0
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 86.0
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.1e-48 194.5 107 85.0
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 5.4e-48 194.1 103 88.3
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.4e-48 194.1 107 85.0
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 5.4e-48 194.1 107 84.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.4e-48 194.1 107 85.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.4e-48 194.1 107 83.2
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 7.1e-48 193.7 107 85.0
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 7.1e-48 193.7 107 84.1
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 9.2e-48 193.4 107 84.1
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 9.2e-48 193.4 107 83.2
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.1e-47 192.2 104 87.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.1e-47 192.2 104 87.5
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.7e-47 191.8 107 84.1
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.7e-47 191.8 107 82.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 84.1
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 81.3
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 7.8e-47 190.3 106 84.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 82.2
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 82.2
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 81.3
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 2.3e-46 188.7 107 81.3
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.0e-46 188.3 106 83.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 3.9e-46 188.0 105 81.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.9e-46 188.0 106 84.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 81.3
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 81.3
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 81.3
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 6.6e-46 187.2 107 80.4
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 8.6e-46 186.8 106 81.1
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 81.3
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 80.4
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 80.4
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 80.4
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 81.3
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.5e-45 186.0 107 80.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.9e-45 185.7 105 82.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 80.4
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.6e-45 184.1 106 80.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 7.3e-45 183.7 106 79.2
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 9.5e-45 183.3 106 79.2
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.2e-44 183.0 106 79.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.6e-44 182.6 105 80.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.6e-44 181.4 103 80.6
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 79.4
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 4.7e-44 181.0 105 80.0
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 4.7e-44 181.0 107 78.5
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 8.1e-44 180.3 105 79.0
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 8.1e-44 180.3 105 79.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 78.1
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.4e-43 179.5 103 79.6
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 80.0
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 4.0e-43 177.9 97 85.6
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 4.0e-43 177.9 105 78.1
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.0e-43 177.9 103 76.7
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 5.2e-43 177.6 106 78.3
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 5.2e-43 177.6 105 78.1
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.2e-43 177.6 103 76.7
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 6.8e-43 177.2 105 78.1
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 6.8e-43 177.2 107 77.6
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 74.8
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.2e-42 176.4 106 76.4
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 79.0
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 73.8
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.4e-42 174.5 97 83.5
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 4.4e-42 174.5 105 76.2
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 74.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 75.7
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 73.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 9.9e-42 173.3 107 72.9
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 9.9e-42 173.3 103 75.7
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 9.9e-42 173.3 103 75.7
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 75.2
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.3e-41 172.9 97 81.4
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 76.0
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 72.9
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 72.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 72.9
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.7e-41 172.6 105 76.2
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.2e-41 172.2 105 74.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 72.0
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 3.8e-41 171.4 105 71.4
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.8e-41 171.4 107 72.0
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.8e-41 171.4 107 72.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.9e-41 171.0 107 72.0
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.4e-41 170.6 103 74.8
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 102 75.5
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-40 169.9 103 72.8
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.1e-40 169.9 103 73.8
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.1e-40 169.9 103 73.8
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.4e-40 169.5 103 73.8
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.9e-40 169.1 104 72.1
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 2.4e-40 168.7 103 76.7
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.2e-40 168.3 107 71.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 3.2e-40 168.3 103 73.8
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 4.1e-40 167.9 103 75.7
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 5.4e-40 167.5 105 72.4
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 72.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 9.2e-40 166.8 109 71.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.1e-39 165.6 102 73.5
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 2.7e-39 165.2 107 68.2
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 69.2
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 71.4
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.0e-38 163.3 107 68.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.3e-38 162.9 110 68.2
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 3.0e-38 161.8 102 70.6
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.9e-37 159.1 97 75.3
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.9e-37 159.1 108 69.4
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 69.5
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 3.6e-36 154.8 105 65.7
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 6.2e-36 154.1 105 65.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.4e-35 152.9 87 75.9
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.4e-35 152.9 97 68.0
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.2e-35 151.0 169 49.7
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 2.6e-34 148.7 89 73.0
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 3.4e-34 148.3 100 66.0
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 5.8e-34 147.5 87 79.3
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.2e-31 139.8 80 81.2
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.3e-29 131.7 104 59.6
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 4.3e-29 131.3 100 60.0
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.8e-28 127.9 102 58.8
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 6.2e-28 127.5 76 73.7
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.1e-27 126.7 102 56.9
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.4e-27 126.3 82 70.7
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 5.3e-27 124.4 72 75.0
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 5.3e-27 124.4 95 57.9
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 9.0e-27 123.6 63 92.1
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 2.6e-26 122.1 103 56.3
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 3.5e-23 111.7 73 71.2
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.3e-22 109.0 95 45.3
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.1e-20 102.4 67 71.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 2.8e-20 102.1 63 74.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 4.0e-19 98.2 92 46.7
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 9.0e-19 97.1 69 66.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 2.0e-18 95.9 59 76.3
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 9.9e-18 93.6 70 61.4
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.9e-17 92.0 53 79.2
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 6.4e-17 90.9 45 88.9
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.1e-16 90.1 65 66.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.4e-16 89.0 89 42.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.2e-16 88.6 55 70.9
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 3.2e-16 88.6 60 68.3
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.6e-15 86.3 63 65.1
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.6e-15 84.7 105 47.6
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 4.6e-15 84.7 54 70.4
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 7.9e-15 84.0 51 76.5
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 8.7e-14 80.5 40 82.5
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 7.9e-07 57.4 87 34.5


User provided reference genes

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