Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 7.5e-189 663.7 335 100.0
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.6e-167 592.8 335 89.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.4e-166 589.0 335 88.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.7e-164 582.8 335 87.8
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 4.8e-151 538.1 335 80.9
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.8e-150 536.2 335 80.3
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 6.9e-150 534.3 335 78.8
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 3.8e-148 528.5 337 78.9
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 6.5e-148 527.7 335 79.7
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.3e-145 519.2 335 77.3
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 3.3e-144 515.4 335 77.0
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.9e-140 502.3 334 73.7
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.9e-139 499.6 334 75.1
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 4.2e-139 498.4 355 72.1
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 2.7e-138 495.7 355 71.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 4.6e-138 495.0 333 74.2
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.0e-137 493.8 335 73.7
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.8e-137 493.0 335 71.9
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.3e-137 492.7 335 72.8
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 3.0e-137 492.3 335 73.4
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 3.0e-137 492.3 335 71.9
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 3.9e-137 491.9 335 74.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 6.7e-137 491.1 334 73.7
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.1e-136 490.3 335 73.1
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.5e-136 490.0 335 72.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.9e-136 489.6 335 72.8
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.5e-136 489.2 335 72.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 3.3e-136 488.8 333 73.6
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.3e-136 488.4 335 72.2
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 9.7e-136 487.3 334 73.1
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.6e-135 486.5 335 74.0
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.6e-135 486.5 333 72.7
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.2e-135 486.1 335 72.8
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.7e-135 485.3 335 71.6
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.0e-133 479.6 335 71.3
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 2.6e-133 479.2 335 71.6
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.4e-133 478.8 335 72.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.4e-133 478.8 335 70.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.0e-132 477.2 334 71.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.9e-132 475.7 335 70.4
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 3.8e-132 475.3 335 71.3
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 3.8e-132 475.3 335 71.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 5.0e-132 474.9 336 69.9
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.1e-131 473.8 336 70.5
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.1e-131 473.8 335 71.3
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.5e-131 472.6 334 70.4
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 3.2e-131 472.2 336 69.0
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 9.4e-131 470.7 335 69.3
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.1e-130 469.5 334 69.5
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.1e-130 469.5 335 71.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.7e-130 469.2 336 70.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 4.6e-130 468.4 335 70.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 6.1e-130 468.0 332 69.3
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 6.1e-130 468.0 334 68.0
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 7.9e-130 467.6 334 68.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 7.9e-130 467.6 335 69.0
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-129 466.8 334 68.6
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.3e-129 466.1 332 70.2
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.0e-129 465.7 334 68.3
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 5.1e-129 464.9 334 68.3
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 6.7e-129 464.5 334 67.1
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.7e-129 464.5 334 68.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 8.8e-129 464.2 330 69.4
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 8.8e-129 464.2 330 69.4
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-128 463.8 330 69.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-128 463.8 334 68.3
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.5e-128 463.4 334 68.3
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.0e-128 463.0 334 68.3
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.6e-128 462.6 330 69.4
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 3.3e-128 462.2 332 69.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.4e-128 461.8 330 69.4
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 5.7e-128 461.5 331 69.2
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 5.7e-128 461.5 333 68.2
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 7.4e-128 461.1 333 69.1
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.7e-127 459.9 331 69.2
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.7e-127 459.9 330 68.8
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-127 459.9 334 67.7
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.8e-127 458.4 330 68.2
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 6.3e-127 458.0 330 69.1
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 6.3e-127 458.0 330 69.1
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 8.2e-127 457.6 330 68.8
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.1e-126 457.2 330 69.4
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.8e-126 456.4 330 68.8
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.1e-126 455.7 334 66.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 9.1e-126 454.1 335 66.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.6e-125 452.6 334 66.2
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.9e-124 449.1 335 66.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 6.5e-124 448.0 334 65.6
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.4e-123 446.8 397 58.9
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 9.4e-123 444.1 335 66.3
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 9.4e-123 444.1 334 65.6
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.2e-122 443.7 335 68.4
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.6e-122 443.4 335 66.9
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.7e-122 442.6 330 66.7
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.7e-122 442.6 327 66.7
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.0e-121 440.7 336 65.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.8e-121 439.9 331 68.0
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.5e-120 436.8 335 64.5
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.0e-120 436.4 336 65.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-120 436.4 336 64.6
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.6e-120 436.0 336 64.6
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.6e-120 436.0 335 65.1
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.7e-120 434.9 335 65.1
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-119 433.7 335 65.1
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.8e-119 431.8 335 64.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 8.2e-119 431.0 336 64.6
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-118 430.6 336 64.3
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.1e-118 428.7 306 67.6
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.2e-115 418.7 335 61.5
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 3.1e-110 402.5 277 72.2
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 5.9e-109 398.3 336 59.5
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 5.0e-108 395.2 337 60.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.6e-106 390.2 319 63.0
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.0e-105 385.6 277 68.6
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.5e-104 383.6 351 56.7
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.6e-100 367.9 325 57.8
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.2e-99 365.5 330 55.5
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.2e-99 365.5 320 57.5
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.1e-98 361.7 330 55.2
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.0e-97 359.4 318 56.0
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 3.2e-86 322.8 335 54.6
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.0e-85 320.1 335 53.4
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 4.6e-85 318.9 303 51.2
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 2.7e-77 293.1 351 46.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 6.2e-74 282.0 206 71.4
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 2.6e-72 276.6 335 47.8
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.3e-71 274.2 207 66.7
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.9e-70 270.4 299 46.5
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 9.2e-70 268.1 320 44.1
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 9.2e-70 268.1 326 42.0
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.1e-65 253.1 282 47.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.4e-64 249.6 319 39.8
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.9e-63 245.7 181 63.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-62 244.6 301 44.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.7e-60 235.0 295 43.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-59 233.0 294 40.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.3e-59 231.9 314 39.5
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-58 231.1 327 37.6
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-55 220.7 295 40.7
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-55 220.3 282 40.8
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.4e-49 200.3 329 34.7
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 6.9e-49 198.7 207 52.2
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 4.5e-48 196.1 156 66.0
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.1e-46 191.4 152 67.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.2e-46 189.5 150 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.4e-46 189.1 153 54.2
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.8e-42 176.0 304 35.9
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.1e-42 175.3 333 31.2
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.9e-41 172.2 304 34.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-40 170.6 304 34.5
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 4.5e-40 169.5 131 67.9
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-38 164.9 151 58.9
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.9e-38 164.1 123 69.1
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-36 158.3 331 29.3
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.9e-36 156.4 312 32.4
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.7e-36 155.2 141 61.7
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.4e-33 147.9 210 40.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.8e-31 139.8 316 26.9
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.3e-30 135.2 299 27.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.9e-28 129.8 295 32.5
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-27 127.5 103 56.3
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.7e-26 123.2 296 30.4
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.4e-25 120.6 315 28.3
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 4.5e-24 116.3 119 45.4
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.5e-24 116.3 78 69.2
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.5e-23 112.5 295 28.5
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.2e-22 110.2 220 28.2
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 4.2e-22 109.8 77 71.4
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 9.4e-22 108.6 100 60.0
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-20 104.8 306 28.8
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.3e-20 104.0 323 27.9
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-18 98.2 310 27.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.9e-17 92.4 154 37.0
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 3.4e-16 90.1 351 24.5
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 6.1e-13 79.3 301 24.3
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 4.5e-08 63.2 40 80.0
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-07 60.5 151 32.5
PRCOL_00005847 Prasinoderma coloniale HOM05D047694 ORTHO05D049123 8.5e-07 58.9 258 24.8
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-06 57.4 83 43.4


User provided reference genes

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