Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 0.0e+00 1615.1 824 100.0
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 0.0e+00 1360.9 830 83.1
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 0.0e+00 1318.1 777 82.2
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1293.9 824 78.2
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 0.0e+00 1261.1 825 76.4
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 0.0e+00 1255.7 825 75.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 0.0e+00 1239.2 727 84.9
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 0.0e+00 1209.5 824 73.8
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1181.0 828 71.4
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1178.7 824 71.0
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1172.9 824 70.8
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 0.0e+00 1169.1 778 73.5
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 0.0e+00 1151.0 823 69.7
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1133.6 828 69.3
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 0.0e+00 1129.4 779 70.6
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1123.2 830 67.6
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1119.0 833 67.3
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 0.0e+00 1104.0 684 79.5
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.3e-311 1072.0 734 71.4
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 9.8e-307 1056.6 809 64.3
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 3.5e-304 1048.1 835 62.5
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 9.5e-302 1040.0 837 61.9
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 6.8e-300 1033.9 774 65.5
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 4.6e-296 1021.1 714 70.2
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 6.8e-292 1007.3 785 62.2
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 2.6e-291 1005.4 787 62.8
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 4.9e-290 1001.1 790 61.3
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 5.4e-289 997.7 790 60.5
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.2e-288 996.5 792 61.6
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 6.6e-287 990.7 789 63.5
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 9.6e-286 986.9 788 61.3
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.2e-283 979.9 790 60.1
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 3.4e-283 978.4 845 57.3
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.9e-282 975.3 784 61.6
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 6.6e-279 964.1 805 58.9
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.3e-277 959.9 797 59.1
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.3e-277 959.9 821 59.7
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.1e-276 956.8 824 58.5
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.8e-276 956.1 796 58.4
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 2.6e-275 952.2 828 57.2
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.3e-274 949.9 767 61.8
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.2e-273 945.3 822 57.7
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.7e-272 942.2 827 58.0
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.0e-271 940.3 822 57.5
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.3e-271 939.9 748 61.1
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.3e-270 935.3 799 58.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 4.3e-270 934.9 844 56.8
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 7.4e-270 934.1 741 62.3
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 6.2e-269 931.0 805 57.8
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 5.3e-268 927.9 793 58.5
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.3e-268 927.9 801 57.2
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 7.6e-267 924.1 797 58.3
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 3.8e-266 921.8 790 58.4
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.9e-266 921.4 791 57.8
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.4e-266 921.0 801 56.7
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.6e-264 916.4 800 57.9
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.3e-263 912.5 779 58.9
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.3e-263 912.5 844 54.7
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.1e-263 911.4 797 58.7
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.3e-261 906.7 789 58.9
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.8e-260 902.9 805 56.1
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.5e-259 899.8 791 57.4
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 5.8e-259 897.9 796 55.4
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.0e-258 897.1 822 55.7
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.3e-258 896.7 794 55.5
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 6.5e-258 894.4 770 58.6
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 6.5e-258 894.4 793 55.0
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 8.4e-258 894.0 787 56.2
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 7.1e-257 891.0 796 54.9
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.3e-255 886.7 757 58.7
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 2.3e-255 885.9 804 55.6
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.9e-254 882.9 790 56.8
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.9e-254 882.9 786 57.6
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.9e-254 882.9 786 57.9
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 7.4e-254 880.9 796 54.4
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 7.4e-254 880.9 770 58.7
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 2.2e-253 879.4 797 57.1
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 6.3e-253 877.9 796 54.5
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.4e-252 876.7 797 54.5
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-252 875.9 801 54.9
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 3.4e-251 872.1 792 55.3
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 5.9e-251 871.3 803 56.4
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.0e-250 870.5 796 54.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.2e-250 869.4 815 55.3
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 3.8e-250 868.6 797 53.7
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 3.8e-250 868.6 797 53.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.1e-249 867.1 796 53.8
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 9.3e-249 864.0 678 63.3
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 1.2e-248 863.6 791 54.7
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.6e-248 863.2 678 63.0
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 8.8e-247 857.4 814 54.4
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.5e-246 856.7 790 54.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.7e-245 853.2 793 54.1
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.3e-242 843.6 784 56.0
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.2e-242 842.8 779 55.1
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 2.1e-240 836.3 796 52.4
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 6.1e-240 834.7 773 53.8
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 7.9e-240 834.3 788 52.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.0e-238 829.7 769 54.2
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 4.8e-237 825.1 822 51.0
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 4.1e-236 822.0 780 53.5
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.6e-235 819.3 790 52.7
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 2.2e-234 816.2 822 50.7
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.3e-229 800.4 788 52.4
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 8.2e-229 797.7 760 56.1
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.0e-227 793.1 686 57.6
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.0e-222 776.5 797 51.2
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.6e-214 749.6 820 48.0
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.4e-206 722.6 847 46.8
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 3.1e-204 716.1 825 46.5
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 3.5e-203 712.6 909 44.7
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.5e-201 706.4 797 49.4
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.9e-196 690.3 513 65.5
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.4e-196 689.9 611 55.3
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 7.8e-195 684.9 654 52.3
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.8e-192 676.4 765 46.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.2e-190 671.0 791 45.6
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 2.6e-190 669.8 826 44.7
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 3.3e-185 652.9 570 57.0
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.8e-175 620.5 705 48.2
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.6e-174 616.7 686 49.3
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.2e-172 609.8 762 42.5
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.2e-168 597.8 692 47.3
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.1e-161 574.7 340 82.4
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-156 558.1 705 43.3
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.1e-148 531.6 377 71.1
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.8e-143 514.2 388 64.7
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.7e-138 495.7 461 53.4
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.9e-135 485.7 343 69.1
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.0e-133 479.6 713 39.0
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 2.5e-124 450.7 530 44.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.7e-113 412.1 432 50.0
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 1.4e-103 381.7 577 37.8
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.5e-97 361.7 855 28.5
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.3e-96 358.6 322 55.0
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 2.2e-96 357.8 787 31.6
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.6e-93 346.3 357 48.7
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.3e-85 322.0 454 40.3
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 5.0e-85 320.1 398 44.2
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 3.6e-75 287.3 307 46.9
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.6e-67 260.8 254 50.0
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 3.4e-65 254.2 395 35.7
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.3e-60 237.7 199 59.3
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 3.5e-54 217.6 179 63.1
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 8.7e-53 213.0 177 64.4
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.5e-36 159.1 117 70.9
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.9e-28 132.1 127 44.1
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.1e-27 128.6 143 46.2
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-23 116.3 116 51.7
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.5e-20 105.1 89 65.2
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 2.4e-18 98.6 121 48.8
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.0e-16 90.9 114 36.8
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 3.2e-15 88.2 50 78.0
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 2.4e-10 72.0 88 40.9
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.5e-09 69.3 51 56.9
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 4.5e-09 67.8 36 75.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 4.5e-09 67.8 63 50.8


User provided reference genes

Program Settings