Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 2.2e-194 682.2 357 100.0
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 3.8e-53 213.0 255 54.9
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 1.1e-44 184.9 248 54.4
Medtr8g028870 Medicago truncatula HOM05D006343 ORTHO05D005694 4.0e-31 139.8 213 50.2
TPR.G17916 Trifolium pratense HOM05D006343 ORTHO05D005694 5.5e-28 129.4 273 42.9
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 3.4e-22 110.2 305 37.7
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 7.6e-22 109.0 318 36.2
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 9.3e-20 102.1 296 36.8
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 3.5e-19 100.1 305 36.1
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 2.3e-18 97.4 216 37.5
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 3.0e-18 97.1 317 35.3
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 5.1e-18 96.3 310 38.1
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 3.3e-17 93.6 308 37.0
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 8.2e-16 89.0 316 36.1
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 1.1e-15 88.6 312 34.3
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 1.4e-15 88.2 273 38.8
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 3.1e-15 87.0 317 33.1
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 5.3e-15 86.3 210 37.1
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 5.3e-15 86.3 210 36.2
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 9.0e-15 85.5 220 33.6
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 1.2e-14 85.1 266 35.0
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 2.0e-14 84.3 239 35.1
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 1.7e-13 81.3 85 57.6
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 1.7e-13 81.3 295 36.6
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 2.2e-13 80.9 289 29.8
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 2.9e-13 80.5 310 36.1
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 3.8e-13 80.1 85 56.5
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 1.1e-12 78.6 266 33.5
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.1e-12 78.6 242 35.1
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.4e-12 78.2 314 34.7
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 1.9e-12 77.8 227 33.9
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 1.9e-12 77.8 130 42.3
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 3.2e-12 77.0 113 47.8
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 3.2e-12 77.0 314 32.2
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 7.2e-12 75.9 196 35.2
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 1.2e-11 75.1 88 51.1
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 2.7e-11 73.9 225 33.8
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 2.7e-11 73.9 226 32.3
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.6e-11 73.2 292 30.8
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 6.1e-11 72.8 136 39.7
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 7.9e-11 72.4 200 32.5
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 7.9e-11 72.4 227 32.6
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 7.9e-11 72.4 312 35.6
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 7.9e-11 72.4 313 30.4
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 2.3e-10 70.9 112 49.1
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.9e-10 70.1 282 32.3
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 3.9e-10 70.1 229 34.5
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.1e-10 69.7 292 30.5
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 8.8e-10 68.9 213 33.8
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.8e-10 68.9 295 30.5
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.1e-09 68.6 239 31.4
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 1.5e-09 68.2 299 31.1
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-09 67.8 304 28.9
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-09 67.8 213 33.3
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 1.9e-09 67.8 252 31.3
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 3.3e-09 67.0 283 31.8
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 4.3e-09 66.6 295 31.9
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.4e-09 65.9 297 27.9
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 9.7e-09 65.5 301 33.2
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 1.7e-08 64.7 310 29.4
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 2.2e-08 64.3 215 33.0
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 2.2e-08 64.3 297 28.3
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 2.2e-08 64.3 206 34.5
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 3.7e-08 63.5 221 31.2
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 3.7e-08 63.5 306 28.4
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 4.8e-08 63.2 249 28.5
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 8.2e-08 62.4 293 34.1
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.2e-08 62.4 295 28.1
Sabra14G0073200 Salix brachista HOM05D006343 ORTHO05D005694 1.1e-07 62.0 183 31.1
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 1.4e-07 61.6 225 29.3
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 1.8e-07 61.2 268 28.7
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.8e-07 61.2 292 28.8
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 2.4e-07 60.8 238 31.5
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 2.4e-07 60.8 116 40.5
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 2.4e-07 60.8 178 35.4
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 3.1e-07 60.5 310 29.4
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 4.1e-07 60.1 139 38.1
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 6.9e-07 59.3 213 32.4
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 9.1e-07 58.9 252 27.8
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 9.1e-07 58.9 308 32.1
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.2e-06 58.5 100 41.0
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 1.5e-06 58.2 212 31.6
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.5e-06 58.2 227 29.1
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.0e-06 57.8 304 28.9
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 2.0e-06 57.8 132 38.6
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 2.0e-06 57.8 256 28.1
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 4.5e-06 56.6 304 29.3
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 4.5e-06 56.6 310 26.1
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 4.5e-06 56.6 311 25.7
Solyc03g095830.3 Solanum lycopersicum HOM05D064734 ORTHO05D005694 4.5e-06 56.6 222 32.4
arahy.Tifrunner.gnm1.ann1.C4511I Arachis hypogaea HOM05D051984 ORTHO05D005694 7.7e-06 55.8 109 45.9
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 7.7e-06 55.8 262 27.5
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 7.7e-06 55.8 48 60.4


User provided reference genes

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