Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g028140 Medicago truncatula HOM05D005998 ORTHO05D007664 1.4e-120 437.2 396 100.0
Psat4g158400 Pisum sativum HOM05D005998 ORTHO05D007664 1.7e-99 367.1 396 89.4
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 1.7e-94 350.5 395 87.3
Ca_23566_v3 Cicer arietinum L. HOM05D005998 ORTHO05D007664 1.4e-88 330.9 390 87.7
Lj3g0009731 Lotus japonicus HOM05D005998 ORTHO05D007664 7.3e-82 308.5 389 83.5
Glyma.07G060100 Glycine max HOM05D005998 ORTHO05D007664 2.9e-78 296.6 389 82.3
Thecc.01G205300 Theobroma cacao HOM05D005998 ORTHO05D007664 2.1e-57 227.3 386 58.3
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 3.6e-57 226.5 388 43.3
Atru.chr6.3489 Acer truncatum HOM05D005998 ORTHO05D007664 6.4e-54 215.7 377 60.2
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 1.9e-53 214.2 378 58.2
TWI75G0247 Tripterygium wilfordii HOM05D005998 ORTHO05D007664 4.2e-53 213.0 385 54.5
FvH4_2g17281 Fragaria vesca HOM05D005998 ORTHO05D007664 7.1e-53 212.2 377 68.2
Ciclev10015543m.g Citrus clementina HOM05D005998 ORTHO05D007664 6.0e-52 209.1 386 58.8
CANSAT25G0419 Cannabis sativa HOM05D005998 ORTHO05D007664 1.3e-51 208.0 381 55.4
RcHm_v2.0_Chr6g0281791 Rosa chinensis HOM05D005998 ORTHO05D007664 3.0e-51 206.8 371 63.3
Manes.13G057500 Manihot esculenta HOM05D005998 ORTHO05D007664 5.1e-51 206.1 385 63.1
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 6.6e-51 205.7 388 57.0
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 8.7e-51 205.3 377 56.0
Prupe.8G184400 Prunus persica HOM05D005998 ORTHO05D007664 3.3e-50 203.4 379 58.6
MD05G1151800 Malus domestica HOM05D005998 ORTHO05D007664 1.3e-49 201.4 379 63.1
Gohir.D11G153100 Gossypium hirsutum HOM05D005998 ORTHO05D007664 3.6e-49 199.9 378 57.1
Peaxi162Scf00372g00061 Petunia axillaris HOM05D005998 ORTHO05D007664 6.2e-49 199.1 382 55.0
Gohir.A11G144800 Gossypium hirsutum HOM05D005998 ORTHO05D007664 1.1e-48 198.4 378 57.1
Sp3g06470 Schrenkiella parvula HOM05D005998 ORTHO05D007664 1.4e-48 198.0 388 54.6
AT3G07550 Arabidopsis thaliana HOM05D005998 ORTHO05D007664 2.4e-48 197.2 388 55.2
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 4.0e-48 196.4 378 38.9
PGSC0003DMG400020641 Solanum tuberosum HOM05D005998 ORTHO05D007664 4.0e-48 196.4 379 55.7
Carub.0003s0710 Capsella rubella HOM05D005998 ORTHO05D007664 5.3e-48 196.1 376 54.8
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 1.5e-47 194.5 387 55.0
AL3G18890 Arabidopsis lyrata HOM05D005998 ORTHO05D007664 3.4e-47 193.4 387 55.0
Eucgr.H00683 Eucalyptus grandis HOM05D005998 ORTHO05D007664 4.5e-47 193.0 385 62.1
Nitab4.5_0003952g0080 Nicotiana tabacum HOM05D005998 ORTHO05D007664 3.8e-46 189.9 379 55.7
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 6.4e-46 189.1 392 52.0
Lsat_1_v5_gn_8_98580 Lactuca sativa HOM05D005998 ORTHO05D007664 6.4e-46 189.1 377 50.1
TAR362G0769 Trochodendron aralioides HOM05D005998 ORTHO05D007664 1.1e-45 188.3 385 59.0
Solyc06g007680.1 Solanum lycopersicum HOM05D005998 ORTHO05D007664 1.9e-45 187.6 392 53.6
Nitab4.5_0002641g0010 Nicotiana tabacum HOM05D005998 ORTHO05D007664 3.2e-45 186.8 382 55.0
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.3e-45 185.3 378 33.6
Cc02_g30680 Coffea canephora HOM05D005998 ORTHO05D007664 1.2e-44 184.9 391 52.7
Sopen06g002580 Solanum pennellii HOM05D005998 ORTHO05D007664 2.7e-44 183.7 379 53.6
THA.LOC104819025 Tarenaya hassleriana HOM05D005998 ORTHO05D007664 6.0e-44 182.6 299 49.2
QL09p045684 Quercus lobata HOM05D005998 ORTHO05D007664 7.9e-44 182.2 393 52.7
BraA05t22797Z Brassica rapa HOM05D005998 ORTHO05D007664 3.9e-43 179.9 376 47.6
Potri.017G056400 Populus trichocarpa HOM05D005998 ORTHO05D007664 3.9e-43 179.9 385 59.0
PGR083G1807 Punica granatum HOM05D005998 ORTHO05D007664 1.9e-42 177.6 376 54.0
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 3.3e-42 176.8 301 42.2
CAN.G181.48 Capsicum annuum HOM05D005998 ORTHO05D007664 4.3e-42 176.4 379 45.4
PSO017G2023 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-41 174.9 387 54.0
Sabra17G0050000 Salix brachista HOM05D005998 ORTHO05D007664 2.8e-41 173.7 385 60.0
CSS0043446 Camellia sinensis var. sinensis HOM05D005998 ORTHO05D007664 4.8e-41 172.9 365 54.8
A05p40660 Brassica napus HOM05D005998 ORTHO05D007664 6.2e-41 172.6 376 46.8
Aa31LG5G18090 Aethionema arabicum HOM05D005998 ORTHO05D007664 1.8e-40 171.0 302 46.0
C05p59770 Brassica napus HOM05D005998 ORTHO05D007664 1.8e-40 171.0 385 56.4
BolC5t34631H Brassica oleracea HOM05D005998 ORTHO05D007664 1.8e-40 171.0 385 56.6
BcaC05g29548 Brassica carinata HOM05D005998 ORTHO05D007664 6.9e-40 169.1 290 46.6
PSO573G0042 Papaver somniferum HOM05D005998 ORTHO05D007664 1.5e-39 167.9 303 53.8
BcaC05g29549 Brassica carinata HOM05D005998 ORTHO05D007664 4.5e-39 166.4 300 51.3
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 1.6e-36 157.9 281 38.1
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 2.7e-36 157.1 381 42.8
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 4.6e-36 156.4 302 35.4
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 6.0e-36 156.0 266 54.9
Haze_03601 Corylus avellana HOM05D005998 ORTHO05D007664 3.9e-35 153.3 402 45.0
CARHR082230 Cardamine hirsuta HOM05D005998 ORTHO05D007664 1.3e-33 148.3 385 50.1
Sabra17G0048300 Salix brachista HOM05D005998 ORTHO05D007664 3.1e-32 143.7 355 60.8
AUR62008051 Chenopodium quinoa HOM05D005998 ORTHO05D007664 2.6e-31 140.6 385 55.3
AUR62028626 Chenopodium quinoa HOM05D005998 ORTHO05D007664 5.0e-30 136.3 326 45.4
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 1.1e-29 135.2 176 66.5
Hma1.2p1_1756F.1_g301020 Hydrangea macrophylla HOM05D005998 ORTHO05D007664 1.2e-28 131.7 113 54.9
Os11g0264200 Oryza sativa ssp. japonica HOM05D005998 ORTHO05D007664 2.1e-28 131.0 291 56.7
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 1.9e-26 124.4 277 54.5
Zm00001eb112540 Zea mays HOM05D005998 ORTHO05D007664 1.9e-26 124.4 301 53.5
Lsat_1_v5_gn_4_46380 Lactuca sativa HOM05D005998 ORTHO05D007664 2.5e-26 124.0 292 45.9
PSO573G0007 Papaver somniferum HOM05D005998 ORTHO05D007664 5.7e-26 122.9 316 54.1
PSO017G3521 Papaver somniferum HOM05D005998 ORTHO05D007664 6.3e-25 119.4 299 39.8
RcHm_v2.0_Chr7g0205731 Rosa chinensis HOM05D005998 ORTHO05D007664 6.3e-25 119.4 91 64.8
PSO017G6055 Papaver somniferum HOM05D005998 ORTHO05D007664 8.2e-25 119.0 314 53.5
DCAR_000509 Daucus carota HOM05D005998 ORTHO05D007664 1.4e-24 118.2 176 63.6
ECA247G3308 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.0e-24 115.5 291 45.0
RcHm_v2.0_Chr5g0064201 Rosa chinensis HOM05D005998 ORTHO05D007664 1.2e-23 115.2 176 48.3
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 2.6e-23 114.0 297 37.7
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 2.6e-23 114.0 297 37.7
HPP92_024394 Vanilla planifolia HOM05D005998 ORTHO05D007664 1.3e-22 111.7 286 44.1
MD10G1146000 Malus domestica HOM05D005998 ORTHO05D007664 8.5e-22 109.0 283 49.8
Duzib211G0440 Durio zibethinus HOM05D005998 ORTHO05D007664 1.1e-21 108.6 173 69.4
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 4.6e-20 103.2 296 36.5
Duzib138G0171 Durio zibethinus HOM05D005998 ORTHO05D007664 1.1e-18 98.6 89 56.2
CDE08G0319 Ceratophyllum demersum HOM05D005998 ORTHO05D007664 1.7e-17 94.7 89 53.9
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 4.8e-17 93.2 295 34.9
ATR0743G036 Amborella trichopoda HOM05D005998 ORTHO05D007664 6.3e-17 92.8 277 45.8
PSO675G7594 Papaver somniferum HOM05D005998 ORTHO05D007664 6.3e-17 92.8 296 34.5
Zm00001eb048880 Zea mays HOM05D005998 ORTHO05D015715 2.4e-16 90.9 89 51.7
Zm00001eb182340 Zea mays HOM05D005998 ORTHO05D015715 2.4e-16 90.9 89 50.6
ECA247G3549 Erigeron canadensis HOM05D005998 ORTHO05D007664 4.5e-15 86.7 288 58.7
Oeu064702.2 Olea europaea HOM05D005998 ORTHO05D007664 5.9e-15 86.3 73 54.8
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 8.5e-14 82.4 302 26.2
ECA232G4734 Erigeron canadensis HOM05D005998 ORTHO05D007664 4.7e-12 76.6 287 39.4
PSO541G3130 Papaver somniferum HOM05D005998 ORTHO05D007664 4.7e-12 76.6 303 34.0
ECA247G1983 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.1e-11 73.2 308 25.6
PSO218G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 6.7e-11 72.8 110 37.3
PSO675G6053 Papaver somniferum HOM05D005998 ORTHO05D007664 6.7e-11 72.8 110 37.3
PSO675G8174 Papaver somniferum HOM05D005998 ORTHO05D007664 6.7e-11 72.8 110 37.3
PSO017G6716 Papaver somniferum HOM05D005998 ORTHO05D007664 8.8e-11 72.4 96 39.6
PSO017G7250 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-10 72.0 107 40.2
PSO017G0196 Papaver somniferum HOM05D005998 ORTHO05D007664 2.0e-10 71.2 105 40.0
PSO340G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 5.7e-10 69.7 107 37.4
PSO675G6885 Papaver somniferum HOM05D005998 ORTHO05D007664 5.7e-10 69.7 107 37.4
PSO837G0060 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-09 68.6 92 42.4
PSO017G5443 Papaver somniferum HOM05D005998 ORTHO05D007664 2.8e-09 67.4 100 39.0
PSO017G6639 Papaver somniferum HOM05D005998 ORTHO05D007664 4.8e-09 66.6 93 41.9
Mapoly0166s0007 Marchantia polymorpha HOM05D005998 ORTHO05D007664 6.3e-09 66.2 101 37.6
PSO017G4719 Papaver somniferum HOM05D005998 ORTHO05D007664 1.8e-08 64.7 87 41.4
PSO017G2859 Papaver somniferum HOM05D005998 ORTHO05D007664 2.4e-08 64.3 83 43.4
PSO017G0268 Papaver somniferum HOM05D005998 ORTHO05D007664 5.3e-08 63.2 91 37.4
ECA247G2923 Erigeron canadensis HOM05D005998 ORTHO05D003386 1.2e-07 62.0 83 38.6
PSO837G0015 Papaver somniferum HOM05D005998 ORTHO05D007664 1.0e-06 58.9 91 41.8
MD15G1077300 Malus domestica HOM05D001905 ORTHO05D001820 2.2e-06 57.8 125 30.4
Duzib116G0512 Durio zibethinus HOM05D001905 ORTHO05D001820 3.8e-06 57.0 131 30.5
ECA247G1593 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.0e-06 56.6 89 40.4
Actinidia22657 Actinidia chinensis HOM05D001905 ORTHO05D001820 8.5e-06 55.8 110 31.8


User provided reference genes

Program Settings