Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 1.7e-109 399.4 213 100.0
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 3.3e-97 358.6 214 91.1
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 6.0e-83 311.2 215 80.0
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.6e-80 303.1 213 78.4
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 1.1e-76 290.4 216 75.0
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 2.5e-76 289.3 211 75.4
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 3.5e-75 285.4 217 74.7
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 1.0e-74 283.9 215 74.9
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 1.0e-74 283.9 217 75.1
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 5.7e-73 278.1 220 72.3
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 7.4e-65 251.1 167 86.2
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 6.3e-56 221.5 207 64.3
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 8.2e-56 221.1 158 77.8
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.6e-54 216.9 216 62.5
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.6e-54 216.9 216 62.5
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 1.6e-54 216.9 159 71.7
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 2.6e-54 216.1 175 73.1
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 3.5e-54 215.7 179 67.0
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 3.5e-54 215.7 175 72.0
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 7.7e-54 214.5 159 76.1
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 1.7e-53 213.4 176 68.2
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 2.2e-53 213.0 183 69.9
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 3.8e-53 212.2 213 62.0
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.9e-52 209.9 216 60.2
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 1.9e-52 209.9 227 58.6
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 3.2e-52 209.1 204 62.7
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 3.2e-52 209.1 158 75.3
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 3.2e-52 209.1 232 59.1
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 4.2e-52 208.8 162 74.7
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 4.2e-52 208.8 178 66.9
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 9.4e-52 207.6 159 72.3
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 1.6e-51 206.8 227 58.6
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 1.6e-51 206.8 211 61.6
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 3.6e-51 205.7 170 71.2
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 3.6e-51 205.7 207 60.9
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 6.1e-51 204.9 161 71.4
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 1.0e-50 204.1 217 58.5
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 1.4e-50 203.8 209 60.8
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 1.4e-50 203.8 171 64.9
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.8e-50 203.4 216 59.7
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 1.8e-50 203.4 220 58.2
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 4.0e-50 202.2 161 68.9
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 4.0e-50 202.2 213 57.3
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 5.2e-50 201.8 210 59.5
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 2.0e-49 199.9 176 62.5
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 2.6e-49 199.5 209 58.9
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 4.4e-49 198.7 171 64.3
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.3e-48 197.2 162 66.7
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 3.7e-48 195.7 159 69.8
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 4.8e-48 195.3 226 55.3
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 6.3e-48 194.9 183 60.1
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 6.3e-48 194.9 175 66.9
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 8.2e-48 194.5 154 71.4
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 8.2e-48 194.5 218 57.3
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 1.1e-47 194.1 178 61.8
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 1.8e-47 193.4 163 63.8
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 7.0e-47 191.4 223 54.7
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 9.1e-47 191.0 210 58.6
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 9.1e-47 191.0 140 74.3
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 9.1e-47 191.0 215 55.8
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.2e-46 190.7 159 67.3
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 2.0e-46 189.9 155 69.7
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 3.5e-46 189.1 159 66.0
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 4.5e-46 188.7 210 55.7
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 4.5e-46 188.7 211 55.0
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 5.9e-46 188.3 208 56.7
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 1.0e-45 187.6 205 57.1
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 2.2e-45 186.4 182 59.9
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 2.2e-45 186.4 163 65.0
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 3.8e-45 185.7 208 56.2
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.0e-45 185.3 204 58.8
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 8.5e-45 184.5 158 64.6
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.1e-44 184.1 185 58.9
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.1e-44 184.1 156 67.3
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.5e-44 183.7 196 59.7
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.5e-44 183.7 215 54.9
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 1.5e-44 183.7 218 53.7
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 3.2e-44 182.6 117 76.1
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 2.7e-43 179.5 218 53.7
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 6.1e-43 178.3 215 52.6
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.4e-42 177.2 205 55.1
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.4e-42 177.2 159 64.2
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 4.0e-42 175.6 195 56.9
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 4.0e-42 175.6 195 56.9
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 5.2e-42 175.3 195 55.9
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 5.2e-42 175.3 195 55.9
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 5.2e-42 175.3 200 55.0
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 5.2e-42 175.3 162 63.0
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 1.2e-41 174.1 190 55.8
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 2.6e-41 172.9 171 57.9
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 7.5e-41 171.4 147 63.9
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 1.7e-40 170.2 198 54.0
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 1.7e-40 170.2 159 61.0
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 2.2e-40 169.9 213 52.6
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 2.8e-40 169.5 198 53.5
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 3.7e-40 169.1 109 78.0
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 3.7e-40 169.1 170 55.9
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 8.3e-40 167.9 126 71.4
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 5.0e-37 158.7 237 46.0
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 8.5e-37 157.9 201 53.2
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 1.5e-36 157.1 106 76.4
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.5e-36 156.4 147 65.3
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 5.5e-36 155.2 158 52.5
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 7.2e-36 154.8 106 66.0
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 9.4e-36 154.5 183 56.3
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 9.4e-36 154.5 180 53.9
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 2.6e-33 146.4 210 51.0
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 3.4e-33 146.0 137 61.3
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 9.8e-33 144.4 149 57.0
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 6.6e-29 131.7 124 54.0
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 6.4e-24 115.2 101 53.5
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 5.9e-22 108.6 110 50.0
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 1.3e-21 107.5 208 35.6
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.0e-15 85.1 145 48.3
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 3.9e-13 79.3 72 54.2
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 1.1e-10 71.2 145 46.2
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.3e-10 70.1 39 89.7
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 1.6e-06 57.4 153 35.3


User provided reference genes

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