Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 4.0e-83 311.2 142 100.0
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 2.3e-38 162.5 100 79.0
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 5.7e-21 104.8 92 56.5
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 5.4e-19 98.2 96 61.5
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 6.3e-12 74.7 84 46.4
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.4e-11 73.6 94 43.6
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.4e-11 73.6 94 43.6
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.8e-11 73.2 77 48.1
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 3.1e-11 72.4 86 39.5
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 4.1e-11 72.0 84 44.0
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 4.1e-11 72.0 100 41.0
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 4.1e-11 72.0 87 47.1
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 7.0e-11 71.2 56 57.1
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 9.2e-11 70.9 99 45.5
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 1.6e-10 70.1 89 41.6
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.6e-10 70.1 54 57.4
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 2.0e-10 69.7 54 57.4
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.0e-10 69.7 54 57.4
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.0e-10 69.7 54 57.4
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.0e-10 69.7 91 44.0
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.5e-10 68.6 107 36.4
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 5.9e-10 68.2 52 61.5
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 5.9e-10 68.2 91 41.8
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 5.9e-10 68.2 93 37.6
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.0e-09 67.4 48 56.2
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.3e-09 67.0 54 55.6
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.3e-09 67.0 54 55.6
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.7e-09 66.6 90 38.9
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.7e-09 66.6 55 54.5
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 2.3e-09 66.2 79 45.6
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.3e-09 66.2 110 34.5
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.9e-09 65.9 90 38.9
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.8e-09 65.5 57 52.6
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 6.6e-09 64.7 57 54.4
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 8.6e-09 64.3 90 37.8
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.1e-08 63.9 93 40.9
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.1e-08 63.9 93 37.6
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 1.5e-08 63.5 98 37.8
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.9e-08 63.2 42 59.5
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 2.5e-08 62.8 78 47.4
Lalb_Chr18g0044291 Lupinus albus HOM05D007041 ORTHO05D008036 2.5e-08 62.8 87 40.2
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 3.3e-08 62.4 91 36.3
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 4.3e-08 62.0 78 44.9
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 4.3e-08 62.0 44 59.1
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 5.6e-08 61.6 48 54.2
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 7.3e-08 61.2 63 47.6
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.3e-08 61.2 50 50.0
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 7.3e-08 61.2 94 36.2
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 9.5e-08 60.8 68 45.6
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 1.2e-07 60.5 86 43.0
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 1.6e-07 60.1 42 59.5
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.6e-07 60.1 43 62.8
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 3.6e-07 58.9 47 51.1
TPR.G7659 Trifolium pratense HOM05D007041 ORTHO05D008036 6.1e-07 58.2 111 36.0
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 8.0e-07 57.8 45 55.6
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 8.0e-07 57.8 94 40.4
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 1.0e-06 57.4 51 51.0
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.0e-06 57.4 82 35.4
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.4e-06 57.0 76 36.8
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.4e-06 57.0 45 55.6
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 1.4e-06 57.0 92 40.2
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 1.8e-06 56.6 37 62.2
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 1.8e-06 56.6 51 49.0
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 1.8e-06 56.6 51 49.0
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.8e-06 56.6 50 44.0
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.8e-06 56.6 39 56.4
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 3.0e-06 55.8 53 47.2
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.0e-06 55.8 92 35.9
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 4.0e-06 55.5 37 59.5
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 4.0e-06 55.5 85 42.4
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 4.0e-06 55.5 44 52.3
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 4.0e-06 55.5 82 39.0
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.8e-06 54.7 45 53.3
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 8.9e-06 54.3 34 64.7
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 8.9e-06 54.3 42 47.6


User provided reference genes

Program Settings