Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 2.9e-176 621.7 294 100.0
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 5.1e-157 557.8 294 89.1
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 6.9e-154 547.4 293 87.4
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.8e-146 522.7 293 83.3
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 2.0e-145 519.2 293 82.3
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.1e-143 513.5 293 81.9
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 1.0e-133 480.3 247 88.3
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 5.2e-125 451.4 294 72.1
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.3e-123 446.8 275 73.5
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 4.2e-119 431.8 274 70.4
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 4.2e-119 431.8 274 70.4
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 2.8e-115 419.1 274 70.4
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 3.7e-115 418.7 273 69.6
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 8.3e-115 417.5 281 68.0
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 1.8e-114 416.4 274 69.0
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 2.4e-114 416.0 274 67.9
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 9.1e-114 414.1 274 70.1
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 9.1e-114 414.1 277 67.1
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 4.5e-113 411.8 274 66.4
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.5e-111 406.8 274 66.1
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 7.2e-111 404.4 274 66.8
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 9.4e-111 404.1 274 66.8
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.6e-110 403.3 294 63.6
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 2.1e-110 402.9 279 67.0
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.7e-110 402.5 294 63.6
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.7e-110 402.5 294 63.6
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 3.6e-110 402.1 274 66.4
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 6.1e-110 401.4 278 67.3
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.4e-109 400.2 294 63.3
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.4e-109 400.2 274 66.4
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.8e-109 399.8 274 66.1
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 2.3e-109 399.4 283 66.4
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.3e-109 399.4 294 62.9
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 5.2e-109 398.3 274 63.5
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.2e-109 398.3 274 65.7
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 6.8e-109 397.9 247 71.7
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 8.8e-109 397.5 275 66.5
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.2e-108 397.1 294 62.6
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 1.2e-108 397.1 274 66.1
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 2.0e-108 396.4 294 63.3
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 3.4e-108 395.6 274 65.7
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 5.7e-108 394.8 283 66.1
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.2e-107 392.9 243 72.8
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.8e-107 392.5 276 63.0
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 4.9e-107 391.7 275 66.5
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 6.3e-107 391.3 274 65.0
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 2.4e-106 389.4 274 65.3
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.2e-105 387.1 276 62.0
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 2.7e-105 386.0 277 63.9
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 1.0e-104 384.0 274 65.0
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.8e-104 382.1 246 71.1
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.9e-103 379.8 249 67.5
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 3.3e-103 379.0 246 69.9
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 3.3e-103 379.0 304 57.9
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 3.3e-103 379.0 292 62.0
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 1.6e-102 376.7 273 61.9
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.4e-101 373.6 273 60.4
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 5.2e-101 371.7 275 59.6
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 8.9e-101 370.9 277 64.3
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.7e-99 366.7 274 62.0
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 2.2e-99 366.3 278 60.4
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 4.9e-99 365.2 274 61.7
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 1.1e-98 364.0 266 61.7
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 3.2e-98 362.5 266 62.0
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.2e-98 362.5 266 62.0
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 2.0e-97 359.8 243 66.3
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 3.5e-97 359.0 266 62.4
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 7.8e-97 357.8 273 61.5
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 1.0e-96 357.5 276 58.7
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.1e-95 354.0 249 65.5
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 5.6e-95 351.7 244 64.3
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 2.1e-94 349.7 291 57.7
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 2.8e-94 349.4 280 60.0
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 6.2e-94 348.2 278 58.6
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.0e-93 347.4 266 58.6
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 6.8e-93 344.7 251 62.5
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.2e-92 344.0 279 60.2
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 1.5e-92 343.6 289 57.8
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.6e-92 342.8 277 58.1
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 9.8e-92 340.9 246 62.2
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 3.7e-91 339.0 311 54.7
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 7.0e-90 334.7 243 63.4
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 3.5e-89 332.4 302 55.0
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 4.6e-89 332.0 299 53.5
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.1e-87 327.4 297 54.2
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 8.1e-86 321.2 236 63.6
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 4.4e-84 315.5 213 66.7
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 1.9e-82 310.1 229 61.1
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.4e-82 309.7 277 54.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 7.1e-82 308.1 295 52.2
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 6.6e-80 301.6 255 59.2
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 8.6e-80 301.2 214 65.9
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 5.6e-79 298.5 276 53.6
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 1.8e-77 293.5 163 81.0
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 1.2e-76 290.8 163 80.4
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.4e-74 283.9 309 46.6
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 3.2e-74 282.7 267 51.3
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 1.7e-72 276.9 204 62.7
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 5.2e-69 265.4 189 63.5
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 1.7e-67 260.4 190 64.7
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 7.1e-66 255.0 248 50.4
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 4.6e-65 252.3 227 54.2
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 1.5e-63 247.3 163 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 1.9e-63 246.9 249 46.6
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 1.5e-60 237.3 258 46.1
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.7e-59 233.8 271 43.5
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 2.2e-59 233.4 289 42.6
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 1.6e-57 227.3 152 64.5
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 5.1e-56 222.2 126 78.6
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.3e-54 217.6 188 55.9
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 3.6e-54 216.1 180 61.7
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 5.3e-53 212.2 183 55.2
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 9.3e-50 201.4 258 41.1
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.2e-49 201.1 163 60.1
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.3e-47 192.6 260 39.6
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 5.6e-47 192.2 118 77.1
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 9.6e-47 191.4 130 71.5
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 5.8e-44 182.2 294 32.0
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.0e-43 181.4 165 52.7
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 1.3e-43 181.0 286 31.8
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 1.3e-43 181.0 105 79.0
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.4e-42 177.6 134 64.2
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 3.5e-41 172.9 258 37.6
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 1.1e-39 167.9 249 35.7
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 1.5e-39 167.5 127 59.1
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.9e-39 167.2 221 42.5
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 5.7e-39 165.6 252 35.3
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.9e-36 155.6 164 51.2
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.7e-33 146.7 92 71.7
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.0e-28 130.6 92 62.0
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.3e-27 127.9 92 60.9
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 8.5e-27 125.2 94 56.4
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 9.4e-26 121.7 142 42.3
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.6e-25 119.4 101 55.4
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 7.4e-23 112.1 92 51.1
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 2.9e-19 100.1 178 33.7
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 8.5e-19 98.6 73 60.3
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 2.5e-18 97.1 97 47.4
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 5.7e-15 85.9 60 70.0
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 1.3e-14 84.7 61 50.8
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.2e-14 84.0 64 56.2
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 8.2e-14 82.0 38 94.7
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 1.9e-10 70.9 94 37.2
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 1.8e-08 64.3 94 36.2
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 1.3e-06 58.2 38 65.8
Lj1g0015259 Lotus japonicus HOM05D000590 ORTHO05D006825 1.7e-06 57.8 36 69.4
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 2.8e-06 57.0 41 63.4
TWI23G0685 Tripterygium wilfordii HOM05D000354 ORTHO05D000717 3.7e-06 56.6 31 74.2
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 6.3e-06 55.8 52 50.0


User provided reference genes

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