Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g027670 Medicago truncatula HOM05D000015 ORTHO05D018412 1.3e-55 219.5 113 100.0
TPR.G3635 Trifolium pratense HOM05D000015 ORTHO05D000734 3.4e-16 88.6 80 62.5
Psat4g163440 Pisum sativum HOM05D000015 ORTHO05D000734 6.4e-15 84.3 80 58.8
Lj3g0026651 Lotus japonicus HOM05D000015 ORTHO05D000734 2.4e-14 82.4 80 56.2
TPR.G13214 Trifolium pratense HOM05D000015 ORTHO05D000734 2.4e-14 82.4 80 58.8
Medtr8g024370 Medicago truncatula HOM05D000015 ORTHO05D000734 3.2e-14 82.0 80 56.2
TPR.G25287 Trifolium pratense HOM05D000015 ORTHO05D000734 3.2e-14 82.0 80 56.2
TPR.G40337 Trifolium pratense HOM05D000015 ORTHO05D000734 3.2e-14 82.0 80 60.0
Medtr8g024420 Medicago truncatula HOM05D000015 ORTHO05D000734 4.1e-14 81.6 80 57.5
Medtr1g078110 Medicago truncatula HOM05D000015 ORTHO05D000734 1.6e-13 79.7 79 58.2
Psat4g217880 Pisum sativum HOM05D000015 ORTHO05D000734 1.6e-13 79.7 80 55.0
TPR.G25258 Trifolium pratense HOM05D000015 ORTHO05D000734 1.6e-13 79.7 80 56.2
TPR.G39125 Trifolium pratense HOM05D000015 ORTHO05D000734 1.6e-13 79.7 79 59.5
TPR.G39400 Trifolium pratense HOM05D000015 ORTHO05D000734 1.6e-13 79.7 80 58.8
TPR.G4809 Trifolium pratense HOM05D000015 ORTHO05D000734 1.6e-13 79.7 82 57.3
TPR.G25284 Trifolium pratense HOM05D000015 ORTHO05D000734 3.5e-13 78.6 81 58.0
Medtr7g118080 Medicago truncatula HOM05D000015 ORTHO05D000734 4.6e-13 78.2 81 59.3
Psat0s4182g0040 Pisum sativum HOM05D000015 ORTHO05D000734 4.6e-13 78.2 83 57.8
Ca_26065_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000734 6.0e-13 77.8 80 58.8
Ca_26066_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000734 6.0e-13 77.8 80 57.5
TPR.G21908 Trifolium pratense HOM05D000015 ORTHO05D000734 6.0e-13 77.8 80 57.5
TPR.G25275 Trifolium pratense HOM05D000015 ORTHO05D000734 6.0e-13 77.8 80 55.0
Medtr8g024390 Medicago truncatula HOM05D000015 ORTHO05D000734 7.8e-13 77.4 80 53.8
Lj3g0020385 Lotus japonicus HOM05D000015 ORTHO05D000734 8.6e-12 73.9 80 52.5
Psat4g155000 Pisum sativum HOM05D000015 ORTHO05D000734 8.6e-12 73.9 80 51.2
Glyma.16G019000 Glycine max HOM05D000015 ORTHO05D000734 1.1e-11 73.6 80 53.8
Medtr2g049200 Medicago truncatula HOM05D000015 ORTHO05D000734 1.1e-11 73.6 80 56.2
Psat4g217960 Pisum sativum HOM05D000015 ORTHO05D000734 1.1e-11 73.6 80 51.2
RcHm_v2.0_Chr6g0308191 Rosa chinensis HOM05D000015 ORTHO05D000734 1.1e-11 73.6 82 51.2
Phvul.010G118800 Phaseolus vulgaris HOM05D000015 ORTHO05D000734 1.5e-11 73.2 80 52.5
Eucgr.F00212 Eucalyptus grandis HOM05D000015 ORTHO05D000734 2.5e-11 72.4 80 50.0
Glyma.16G018900 Glycine max HOM05D000015 ORTHO05D000734 2.5e-11 72.4 80 52.5
Medtr8g024380 Medicago truncatula HOM05D000015 ORTHO05D000734 4.3e-11 71.6 80 48.8
QL02p004418 Quercus lobata HOM05D000015 ORTHO05D000734 4.3e-11 71.6 82 48.8
TAR625G0214 Trochodendron aralioides HOM05D000015 ORTHO05D000734 4.3e-11 71.6 82 50.0
Eucgr.F00208 Eucalyptus grandis HOM05D000015 ORTHO05D000734 5.6e-11 71.2 80 47.5
Psat4g217920 Pisum sativum HOM05D000015 ORTHO05D000734 5.6e-11 71.2 80 50.0
Haze_18033 Corylus avellana HOM05D000015 ORTHO05D000734 7.3e-11 70.9 82 51.2
Eucgr.H05125 Eucalyptus grandis HOM05D000015 ORTHO05D000734 7.3e-11 70.9 80 48.8
FAN20G3214 Fragaria x ananassa HOM05D000015 ORTHO05D000734 7.3e-11 70.9 82 51.2
Eucgr.F00207 Eucalyptus grandis HOM05D000015 ORTHO05D000734 9.5e-11 70.5 80 47.5
Glyma.16G019300 Glycine max HOM05D000015 ORTHO05D000734 9.5e-11 70.5 82 52.4
PGSC0003DMG400015410 Solanum tuberosum HOM05D000015 ORTHO05D000734 1.6e-10 69.7 82 50.0
Nitab4.5_0006769g0040 Nicotiana tabacum HOM05D000015 ORTHO05D000734 2.8e-10 68.9 82 51.2
TAR381G1639 Trochodendron aralioides HOM05D000015 ORTHO05D000734 2.8e-10 68.9 80 50.0
VMungo0331G1695 Vigna mungo HOM05D000015 ORTHO05D000734 2.8e-10 68.9 82 48.8
FvH4_2g34170 Fragaria vesca HOM05D000015 ORTHO05D000734 3.6e-10 68.6 82 50.0
FvH4_2g34230 Fragaria vesca HOM05D000015 ORTHO05D000734 3.6e-10 68.6 82 50.0
FAN24G0995 Fragaria x ananassa HOM05D000015 ORTHO05D000734 3.6e-10 68.6 82 50.0
FAN24G3273 Fragaria x ananassa HOM05D000015 ORTHO05D000734 3.6e-10 68.6 82 50.0
TPR.G13215 Trifolium pratense HOM05D000015 ORTHO05D000734 3.6e-10 68.6 80 50.0
Lj3g0017868 Lotus japonicus HOM05D000015 ORTHO05D000734 6.2e-10 67.8 81 49.4
FAN27G0652 Fragaria x ananassa HOM05D000015 ORTHO05D000734 8.1e-10 67.4 82 48.8
Hma1.2p1_1072F.1_g254180 Hydrangea macrophylla HOM05D000015 ORTHO05D000734 8.1e-10 67.4 82 48.8
Ciclev10000411m.g Citrus clementina HOM05D000015 ORTHO05D000734 1.1e-09 67.0 86 47.7
Nitab4.5_0000287g0110 Nicotiana tabacum HOM05D000015 ORTHO05D000734 1.1e-09 67.0 82 48.8
Solyc12g088760.1 Solanum lycopersicum HOM05D000015 ORTHO05D000734 1.1e-09 67.0 82 50.0
Ca_09542_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000734 1.4e-09 66.6 83 51.8
Solyc04g078740.2 Solanum lycopersicum HOM05D000015 ORTHO05D000734 1.4e-09 66.6 82 48.8
Sopen04g032340 Solanum pennellii HOM05D000015 ORTHO05D000734 1.4e-09 66.6 82 48.8
Sopen12g030670 Solanum pennellii HOM05D000015 ORTHO05D000734 1.4e-09 66.6 82 50.0
CiPaw.16G042000 Carya illinoinensis HOM05D000015 ORTHO05D000734 1.8e-09 66.2 84 50.0
Prupe.1G433300 Prunus persica HOM05D000015 ORTHO05D000734 2.3e-09 65.9 81 48.1
CAN.G1194.6 Capsicum annuum HOM05D000015 ORTHO05D000734 3.1e-09 65.5 82 47.6
CAN.G1194.8 Capsicum annuum HOM05D000015 ORTHO05D000734 3.1e-09 65.5 82 47.6
Glyma.16G019100 Glycine max HOM05D000015 ORTHO05D018412 4.0e-09 65.1 70 52.9
Manes.18G039000 Manihot esculenta HOM05D000015 ORTHO05D000734 4.0e-09 65.1 82 46.3
Nn1g04813 Nelumbo nucifera HOM05D000015 ORTHO05D000734 4.0e-09 65.1 87 44.8
Peaxi162Scf00503g00216 Petunia axillaris HOM05D000015 ORTHO05D000734 4.0e-09 65.1 82 47.6
PGSC0003DMG400007958 Solanum tuberosum HOM05D000015 ORTHO05D000734 5.2e-09 64.7 82 48.8
CSS0022223 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000734 6.8e-09 64.3 82 47.6
DCAR_020923 Daucus carota HOM05D000015 ORTHO05D000734 6.8e-09 64.3 83 43.4
TWI36G1267 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 6.8e-09 64.3 82 47.6
GSVIVG01009474001 Vitis vinifera HOM05D000015 ORTHO05D000734 6.8e-09 64.3 82 50.0
CiPaw.15G054800 Carya illinoinensis HOM05D000015 ORTHO05D000734 8.9e-09 63.9 81 46.9
Cc07_g20610 Coffea canephora HOM05D000015 ORTHO05D000734 8.9e-09 63.9 79 44.3
Dinv35941 Davidia involucrata HOM05D000015 ORTHO05D000734 8.9e-09 63.9 82 46.3
Dinv39301 Davidia involucrata HOM05D000015 ORTHO05D000734 8.9e-09 63.9 83 47.0
Gohir.A06G019700 Gossypium hirsutum HOM05D000015 ORTHO05D000734 8.9e-09 63.9 81 48.1
Hma1.2p1_1072F.1_g254185 Hydrangea macrophylla HOM05D000015 ORTHO05D000734 8.9e-09 63.9 82 43.9
Cpa.g.sc21.181 Carica papaya HOM05D000015 ORTHO05D000734 1.2e-08 63.5 80 47.5
Glyma.07G050200 Glycine max HOM05D000015 ORTHO05D000734 1.2e-08 63.5 80 47.5
Lj4C61G3 Lonicera japonica HOM05D000015 ORTHO05D000734 1.2e-08 63.5 82 48.8
Actinidia23292 Actinidia chinensis HOM05D000015 ORTHO05D000734 1.5e-08 63.2 82 46.3
CAN.G1030.19 Capsicum annuum HOM05D000015 ORTHO05D000734 1.5e-08 63.2 82 47.6
Lalb_Chr17g0343021 Lupinus albus HOM05D000015 ORTHO05D000734 1.5e-08 63.2 83 49.4
Sabra02G0097700 Salix brachista HOM05D000015 ORTHO05D000734 1.5e-08 63.2 82 47.6
TWI36G1292 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 1.5e-08 63.2 82 47.6
Nitab4.5_0001845g0040 Nicotiana tabacum HOM05D000015 ORTHO05D000734 2.0e-08 62.8 82 46.3
Nitab4.5_0011049g0010 Nicotiana tabacum HOM05D000015 ORTHO05D000734 2.0e-08 62.8 82 46.3
PSO170G2301 Papaver somniferum HOM05D000015 ORTHO05D000734 2.0e-08 62.8 83 51.8
Manes.05G175300 Manihot esculenta HOM05D000015 ORTHO05D000734 2.6e-08 62.4 82 46.3
Potri.014G026700 Populus trichocarpa HOM05D000015 ORTHO05D000734 2.6e-08 62.4 81 45.7
VMungo0331G0220 Vigna mungo HOM05D000015 ORTHO05D000734 2.6e-08 62.4 78 46.2
Nitab4.5_0001580g0120 Nicotiana tabacum HOM05D000015 ORTHO05D000734 3.4e-08 62.0 82 45.1
Aqoxy6G01294 Aquilegia oxysepala HOM05D000015 ORTHO05D000734 4.4e-08 61.6 81 44.4
PSO782G0753 Papaver somniferum HOM05D000015 ORTHO05D000734 4.4e-08 61.6 83 50.6
Duzib093G0001 Durio zibethinus HOM05D000015 ORTHO05D000734 5.8e-08 61.2 81 46.9
MD08G1098100 Malus domestica HOM05D000015 ORTHO05D000734 5.8e-08 61.2 82 45.1
Gohir.D06G018200 Gossypium hirsutum HOM05D000015 ORTHO05D000734 7.5e-08 60.8 81 45.7
PGSC0003DMG400015411 Solanum tuberosum HOM05D000015 ORTHO05D000734 7.5e-08 60.8 82 45.1
TWI77G0707 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 7.5e-08 60.8 82 46.3
arahy.Tifrunner.gnm1.ann1.BKK20Z Arachis hypogaea HOM05D000015 ORTHO05D000734 9.9e-08 60.5 86 45.3
Potri.002G124500 Populus trichocarpa HOM05D000015 ORTHO05D000734 9.9e-08 60.5 82 45.1
Oeu012431.1 Olea europaea HOM05D000015 ORTHO05D000734 1.3e-07 60.1 82 41.5
arahy.Tifrunner.gnm1.ann1.LUT726 Arachis hypogaea HOM05D000015 ORTHO05D000734 1.7e-07 59.7 86 44.2
Potri.014G026500 Populus trichocarpa HOM05D000015 ORTHO05D000734 1.7e-07 59.7 81 45.7
TWI36G0165 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 1.7e-07 59.7 82 45.1
COL.COLO4_05623 Corchorus olitorius HOM05D000015 ORTHO05D000734 2.2e-07 59.3 80 45.0
Duzib041G0021 Durio zibethinus HOM05D000015 ORTHO05D000734 2.9e-07 58.9 80 47.5
Eucgr.F00206 Eucalyptus grandis HOM05D000015 ORTHO05D000734 3.7e-07 58.5 72 47.2
Rhsim06G0051800 Rhododendron simsii HOM05D000015 ORTHO05D000734 3.7e-07 58.5 80 43.8
MBI09_g12823_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000734 4.9e-07 58.2 79 43.0
Aqoxy5G01206 Aquilegia oxysepala HOM05D000015 ORTHO05D000734 6.4e-07 57.8 78 50.0
Migut.C00565 Erythranthe guttata HOM05D000015 ORTHO05D000734 6.4e-07 57.8 82 41.5
Sabra14G0018000 Salix brachista HOM05D000015 ORTHO05D000734 6.4e-07 57.8 81 44.4
TWI36G0565 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 6.4e-07 57.8 83 44.6
DCAR_012784 Daucus carota HOM05D000015 ORTHO05D000734 8.3e-07 57.4 82 37.8
ECA247G0984 Erigeron canadensis HOM05D000015 ORTHO05D000734 8.3e-07 57.4 79 45.6
FAN19G2510 Fragaria x ananassa HOM05D000015 ORTHO05D000734 8.3e-07 57.4 88 40.9
FAN26G1013 Fragaria x ananassa HOM05D000015 ORTHO05D000734 8.3e-07 57.4 88 40.9
Gohir.A06G020100 Gossypium hirsutum HOM05D000015 ORTHO05D000734 8.3e-07 57.4 81 44.4
Gohir.D06G018600 Gossypium hirsutum HOM05D000015 ORTHO05D000734 8.3e-07 57.4 81 44.4
FvH4_1g16171 Fragaria vesca HOM05D000015 ORTHO05D000734 1.1e-06 57.0 88 40.9
Nitab4.5_0000724g0020 Nicotiana tabacum HOM05D000015 ORTHO05D000734 1.1e-06 57.0 82 45.1
SalBow7G3115 Salvia bowleyana HOM05D000015 ORTHO05D000734 1.4e-06 56.6 87 41.4
Sc02g0007270 Simmondsia chinensis HOM05D000015 ORTHO05D000734 1.4e-06 56.6 82 42.7
Gorai.010G021600 Gossypium raimondii HOM05D000015 ORTHO05D000734 1.9e-06 56.2 81 44.4
Peaxi162Scf01073g00010 Petunia axillaris HOM05D000015 ORTHO05D000734 1.9e-06 56.2 82 46.3
PGR083G2765 Punica granatum HOM05D000015 ORTHO05D000734 2.4e-06 55.8 80 41.2
HanXRQChr02g0038581 Helianthus annuus HOM05D000015 ORTHO05D000734 4.1e-06 55.1 81 43.2
Thecc.08G004500 Theobroma cacao HOM05D000015 ORTHO05D000734 4.1e-06 55.1 82 43.9
MSTRG.25080 Avicennia marina HOM05D000015 ORTHO05D000734 7.1e-06 54.3 82 37.8
Haze_15385 Corylus avellana HOM05D000015 ORTHO05D000734 7.1e-06 54.3 82 45.1
DCAR_019441 Daucus carota HOM05D000015 ORTHO05D000734 7.1e-06 54.3 80 38.8
GSVIVG01022116001 Vitis vinifera HOM05D000015 ORTHO05D000734 9.2e-06 53.9 81 45.7


User provided reference genes

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