Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g027640 Medicago truncatula HOM05D002352 ORTHO05D003724 2.0e-43 178.7 90 100.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 5.4e-33 144.1 106 75.5
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.2e-32 142.9 106 74.5
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.2e-32 142.9 106 74.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.2e-32 142.9 106 74.5
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.6e-32 142.5 106 73.6
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.6e-32 142.5 106 73.6
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.6e-32 142.5 106 73.6
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.6e-32 142.5 106 73.6
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.6e-32 142.5 106 73.6
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.6e-32 142.5 106 73.6
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 2.1e-32 142.1 106 73.6
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.7e-32 141.7 106 74.5
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 3.5e-32 141.4 106 72.6
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.5e-32 141.4 106 72.6
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.5e-32 141.4 106 72.6
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.5e-32 141.4 106 72.6
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.5e-32 141.4 106 72.6
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 3.5e-32 141.4 106 72.6
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 72.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 73.6
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 72.6
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 72.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 72.6
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 72.6
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 72.6
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 73.6
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 6.0e-32 140.6 106 73.6
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 7.8e-32 140.2 106 72.6
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 7.8e-32 140.2 106 71.7
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 7.8e-32 140.2 106 72.6
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 7.8e-32 140.2 106 72.6
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 7.8e-32 140.2 106 72.6
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.0e-31 139.8 106 70.8
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.0e-31 139.8 106 70.8
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.0e-31 139.8 106 70.8
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.0e-31 139.8 106 72.6
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.3e-31 139.4 106 71.7
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.3e-31 139.4 106 71.7
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.7e-31 139.0 106 71.7
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.7e-31 139.0 106 71.7
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.7e-31 139.0 106 70.8
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.7e-31 139.0 106 72.6
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.7e-31 139.0 106 71.7
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 1.7e-31 139.0 106 71.7
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 71.7
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 70.8
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 70.8
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 69.8
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 70.8
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 70.8
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 70.8
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 71.7
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 71.7
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.3e-31 138.7 106 71.7
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.0e-31 138.3 106 71.7
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 3.0e-31 138.3 106 71.7
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 3.0e-31 138.3 106 69.8
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 3.0e-31 138.3 106 71.7
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 3.0e-31 138.3 106 70.8
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 3.9e-31 137.9 106 71.7
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 3.9e-31 137.9 107 71.0
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 3.9e-31 137.9 106 71.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 5.1e-31 137.5 106 71.7
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 5.1e-31 137.5 106 70.8
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 5.1e-31 137.5 106 70.8
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 5.1e-31 137.5 106 70.8
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.1e-31 137.5 106 69.8
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 5.1e-31 137.5 106 69.8
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 6.6e-31 137.1 106 70.8
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 8.6e-31 136.7 106 69.8
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 8.6e-31 136.7 106 69.8
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.6e-31 136.7 106 69.8
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 8.6e-31 136.7 106 71.7
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 8.6e-31 136.7 106 70.8
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 8.6e-31 136.7 106 70.8
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 8.6e-31 136.7 106 70.8
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.1e-30 136.3 106 69.8
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.1e-30 136.3 106 69.8
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.1e-30 136.3 106 69.8
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 1.1e-30 136.3 106 69.8
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.5e-30 136.0 106 69.8
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.5e-30 136.0 106 69.8
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 1.5e-30 136.0 93 77.4
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.5e-30 136.0 106 68.9
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.9e-30 135.6 106 68.9
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.9e-30 135.6 106 69.8
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.5e-30 135.2 106 69.8
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 2.5e-30 135.2 106 67.9
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 2.5e-30 135.2 106 68.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 1.2e-29 132.9 106 67.9
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.6e-29 132.5 106 67.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.1e-29 132.1 106 67.9
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.1e-29 132.1 106 67.0
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.1e-29 132.1 107 70.1
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.6e-29 131.3 106 65.1
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 3.6e-29 131.3 106 65.1
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 3.6e-29 131.3 102 70.6
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 4.7e-29 131.0 106 67.0
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 6.2e-29 130.6 106 65.1
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 6.2e-29 130.6 106 65.1
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 6.2e-29 130.6 106 66.0
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 8.1e-29 130.2 106 65.1
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 8.1e-29 130.2 106 66.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.4e-28 129.4 106 67.9
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.8e-28 129.0 103 68.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.8e-28 129.0 106 64.2
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.3e-28 128.6 104 68.3
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 3.1e-28 128.3 106 63.2
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 3.1e-28 128.3 106 65.1
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 5.2e-28 127.5 106 63.2
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 5.2e-28 127.5 106 63.2
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 5.2e-28 127.5 106 63.2
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 5.2e-28 127.5 106 63.2
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 5.2e-28 127.5 106 63.2
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.5e-27 125.9 106 63.2
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.5e-27 125.9 106 63.2
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.5e-27 125.9 106 63.2
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 1.5e-27 125.9 106 63.2
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 2.0e-27 125.6 106 64.2
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 3.4e-27 124.8 106 63.2
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 7.5e-27 123.6 106 60.4
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 9.9e-27 123.2 106 63.2
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 6.4e-26 120.6 105 62.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.4e-25 119.4 106 59.4
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.1e-24 115.5 106 59.4
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.7e-23 112.5 137 51.8
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.7e-23 112.5 106 55.7
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.9e-23 111.3 106 56.6
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 8.6e-23 110.2 87 69.0
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.1e-22 109.8 106 55.7
Hma1.2p1_1971F.1_g309590 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 1.5e-22 109.4 106 59.4
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 3.1e-20 101.7 107 53.3
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 1.6e-16 89.4 106 51.9
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 1.3e-15 86.3 70 62.9
vmacro01392 Vaccinium macrocarpon HOM05D002352 ORTHO05D034960 1.4e-09 66.2 66 54.5
Actinidia28877 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.4e-09 65.5 70 57.1
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 1.3e-07 59.7 45 62.2
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.1e-06 56.6 89 46.1


User provided reference genes

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