Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 3.4e-30 134.4 71 100.0
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 3.3e-17 91.3 50 88.0
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.9e-12 75.5 45 82.2
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 4.1e-12 74.3 49 73.5
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 9.2e-12 73.2 37 94.6
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 9.2e-12 73.2 37 94.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.2e-11 72.8 37 91.9
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 2.1e-11 72.0 45 75.6
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.7e-11 71.6 48 72.9
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.6e-11 70.9 41 80.5
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 4.6e-11 70.9 41 82.9
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 4.6e-11 70.9 45 77.8
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 4.6e-11 70.9 37 89.2
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.0e-11 70.5 41 78.0
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 6.0e-11 70.5 37 89.2
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 6.0e-11 70.5 39 87.2
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 7.8e-11 70.1 43 79.1
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 7.8e-11 70.1 43 79.1
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.0e-10 69.7 45 75.6
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.0e-10 69.7 48 70.8
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.7e-10 68.9 37 89.2
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.7e-10 68.9 41 80.5
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 3.0e-10 68.2 37 86.5
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.0e-10 68.2 37 86.5
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.0e-10 68.2 51 68.6
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.9e-10 67.8 39 82.1
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.1e-10 67.4 51 66.7
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 5.1e-10 67.4 39 87.2
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 6.6e-10 67.0 35 88.6
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 6.6e-10 67.0 41 78.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.6e-10 67.0 37 83.8
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 6.6e-10 67.0 39 84.6
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 6.6e-10 67.0 40 82.5
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 8.6e-10 66.6 37 86.5
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 8.6e-10 66.6 40 80.0
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.1e-09 66.2 37 83.8
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.1e-09 66.2 37 81.1
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.1e-09 66.2 37 83.8
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.1e-09 66.2 39 84.6
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.1e-09 66.2 40 80.0
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.1e-09 66.2 41 80.5
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.1e-09 66.2 41 80.5
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.5e-09 65.9 37 81.1
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.5e-09 65.9 37 83.8
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.5e-09 65.9 37 83.8
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.9e-09 65.5 48 68.8
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.9e-09 65.5 48 68.8
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.9e-09 65.5 48 68.8
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.9e-09 65.5 37 78.4
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.9e-09 65.5 37 83.8
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.9e-09 65.5 39 82.1
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 2.5e-09 65.1 44 70.5
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.5e-09 65.1 37 81.1
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.5e-09 65.1 40 77.5
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.5e-09 65.1 40 77.5
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.5e-09 65.1 37 81.1
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 4.3e-09 64.3 37 81.1
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 4.3e-09 64.3 41 73.2
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.3e-09 64.3 37 83.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 4.3e-09 64.3 42 69.0
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.6e-09 63.9 37 81.1
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.6e-09 63.9 37 81.1
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 5.6e-09 63.9 37 81.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.6e-09 63.9 41 75.6
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 5.6e-09 63.9 40 80.0
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 5.6e-09 63.9 39 79.5
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 7.3e-09 63.5 41 73.2
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 7.3e-09 63.5 48 72.9
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 9.5e-09 63.2 41 73.2
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 9.5e-09 63.2 37 73.0
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 9.5e-09 63.2 37 83.8
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 9.5e-09 63.2 37 78.4
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.2e-08 62.8 39 79.5
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.2e-08 62.8 41 73.2
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.2e-08 62.8 39 74.4
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.2e-08 62.8 39 74.4
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.6e-08 62.4 37 78.4
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.6e-08 62.4 40 75.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.6e-08 62.4 37 78.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.1e-08 62.0 37 78.4
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.1e-08 62.0 37 78.4
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 2.1e-08 62.0 37 78.4
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.1e-08 62.0 40 72.5
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 2.1e-08 62.0 37 75.7
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.8e-08 61.6 37 78.4
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 3.6e-08 61.2 37 81.1
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.6e-08 61.2 37 70.3
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.6e-08 61.2 37 75.7
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.6e-08 61.2 37 78.4
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 3.6e-08 61.2 39 76.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 4.7e-08 60.8 37 75.7
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 4.7e-08 60.8 37 75.7
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 4.7e-08 60.8 37 78.4
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 6.2e-08 60.5 37 78.4
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 6.2e-08 60.5 37 75.7
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 8.1e-08 60.1 46 58.7
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 8.1e-08 60.1 37 78.4
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 8.1e-08 60.1 50 62.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.1e-07 59.7 37 75.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.1e-07 59.7 37 75.7
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.4e-07 59.3 37 75.7
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.8e-07 58.9 37 75.7
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.8e-07 58.9 37 75.7
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.8e-07 58.9 37 75.7
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.8e-07 58.9 37 75.7
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 3.1e-07 58.2 37 78.4
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 4.0e-07 57.8 37 73.0
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 4.0e-07 57.8 33 78.8
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 5.2e-07 57.4 37 73.0
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 8.9e-07 56.6 37 64.9
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.5e-06 55.8 37 70.3
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 2.0e-06 55.5 45 64.4
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 3.4e-06 54.7 37 70.3
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 7.6e-06 53.5 27 88.9
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.9e-06 53.1 30 80.0


User provided reference genes

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