Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 5057.3 2482 100.0
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 4306.5 2552 83.5
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 4229.1 2519 83.1
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 3972.2 2563 76.8
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 3835.0 2547 75.2
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 3738.7 2547 73.0
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 3701.4 2546 72.8
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 3626.3 2530 71.1
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 3616.6 2530 71.1
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 3531.5 2389 73.8
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 3170.6 1950 82.0
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2920.2 2551 58.8
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2848.9 2543 57.5
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2833.5 2626 56.1
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2797.7 2558 56.1
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2764.9 1860 74.2
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2749.5 2581 55.9
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2736.1 2556 54.7
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2729.9 2571 54.9
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2726.4 2555 54.4
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2724.5 2556 54.5
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2717.2 2556 54.6
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2715.6 2565 54.4
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2702.2 2555 54.4
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2701.8 2555 54.3
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2693.3 2559 54.2
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2687.1 2551 55.0
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2681.7 2547 54.2
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2643.6 2552 53.9
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2628.2 2566 53.3
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2622.4 2558 52.7
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2620.9 2558 52.9
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2619.7 2579 53.2
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2614.0 2421 55.6
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2613.6 2562 53.7
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2607.4 2555 52.6
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2592.8 2562 52.5
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2576.6 2572 52.3
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2533.4 2553 51.8
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2513.8 2515 53.5
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2501.1 2515 53.1
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2464.5 2548 51.4
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2441.4 2502 51.7
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2440.2 2562 50.3
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2392.8 2539 50.9
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2348.9 2619 48.0
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2318.5 2549 48.8
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2285.8 2569 48.0
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2263.4 2562 48.0
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2236.8 2490 49.0
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2213.7 2558 47.2
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2205.6 2598 46.8
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2197.5 2517 47.7
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2189.8 2565 46.6
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2189.5 2550 46.4
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2187.5 2543 46.7
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2186.0 2545 46.1
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2182.9 2526 47.2
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2170.6 2559 46.2
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2166.3 2538 47.1
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2162.9 2533 47.3
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2156.7 2515 46.4
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2142.5 2513 46.8
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2139.8 2507 46.8
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2137.1 2543 46.8
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2137.1 2513 46.8
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2127.4 2507 46.5
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2127.4 2517 46.7
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2123.6 2568 45.5
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2104.7 2544 45.9
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2100.5 2531 45.4
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2081.6 2510 45.8
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2071.6 2503 46.0
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2052.3 2552 45.0
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1978.8 2529 43.7
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1976.8 1938 53.3
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1954.1 2371 46.0
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 1949.5 2520 43.8
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1944.1 2501 44.0
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1912.9 2566 42.8
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1689.1 2527 40.0
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1639.4 1914 47.0
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1588.5 2567 38.3
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1497.6 2534 37.2
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1372.1 1518 49.4
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1361.7 1509 49.8
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1352.0 1529 48.8
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1324.7 1355 50.6
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1298.5 1332 50.3
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1191.4 1365 46.4
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1129.8 1367 45.4
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.1e-305 1054.7 2725 30.0
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.2e-303 1045.8 1365 44.8
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 5.8e-302 1042.3 1108 51.4
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 1.9e-292 1010.7 1072 51.4
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 6.9e-287 992.3 1806 36.0
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 3.8e-261 906.7 1070 47.6
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 3.8e-261 906.7 1070 47.6
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 5.9e-246 856.3 1201 40.8
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.0e-245 853.2 1093 45.5
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.2e-227 795.4 997 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 6.5e-221 773.1 1591 33.1
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 1.5e-220 771.9 436 84.4
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 4.2e-220 770.4 644 64.4
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.8e-202 711.8 496 69.0
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 4.7e-195 687.2 568 59.7
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 4.7e-195 687.2 1166 35.8
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.9e-192 677.9 625 54.9
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.3e-173 615.9 542 58.7
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.6e-172 609.8 555 55.5
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.3e-171 609.4 2017 27.0
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.8e-168 597.8 684 45.8
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.6e-166 592.4 765 45.6
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.8e-162 578.9 1112 35.4
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 1.1e-151 543.1 458 60.7
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 6.2e-147 527.3 552 56.0
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.5e-140 505.4 662 40.2
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 3.3e-140 505.0 454 53.3
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.5e-119 434.5 918 33.1
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 3.1e-114 418.7 1767 25.4
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.2e-109 401.4 562 42.7
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 6.3e-107 394.4 285 65.3
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 6.6e-96 357.8 227 74.9
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 1.1e-90 340.5 230 72.2
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 5.4e-90 338.2 392 46.9
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.5e-76 293.5 230 62.6
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.6e-76 292.7 197 73.1
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.2e-73 283.9 196 73.0
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 4.6e-73 282.0 178 77.0
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 6.2e-70 271.6 179 71.5
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.4e-68 265.8 270 52.6
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.1e-61 242.7 231 52.4
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 4.9e-59 235.3 236 52.1
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 4.9e-59 235.3 139 86.3
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.9e-48 199.1 420 35.0
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 2.8e-46 193.0 120 76.7
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 6.2e-46 191.8 316 39.2
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.9e-43 182.2 121 71.1
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 4.6e-33 149.1 96 79.2
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 4.6e-33 149.1 96 79.2
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 7.9e-33 148.3 258 34.1
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.3e-32 147.5 235 36.6
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 1.9e-31 143.7 77 85.7
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 3.3e-31 142.9 114 62.3
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 1.3e-30 141.0 88 81.8
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 8.2e-30 138.3 102 69.6
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.1e-29 137.9 75 88.0
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 9.0e-29 134.8 267 31.8
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 2.0e-28 133.7 239 36.0
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 7.6e-28 131.7 211 37.9
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-25 124.0 108 54.6
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-25 124.0 108 54.6
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.0e-24 121.3 504 23.8
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 2.5e-23 116.7 145 42.8
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 9.0e-21 108.2 289 30.1
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.7e-20 105.1 100 57.0
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 3.8e-19 102.8 155 43.9
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.4e-18 100.9 121 42.1
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 7.2e-18 98.6 117 47.0
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 8.8e-16 91.7 156 37.2
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 2.0e-12 80.5 51 68.6
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 1.4e-10 74.3 57 70.2
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.1e-09 70.5 121 31.4


User provided reference genes

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